NP-MRD: Showing NP-Card for (1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol (NP0165509)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-03 00:40:37 UTC

Updated at

2022-09-03 00:40:38 UTC

NP-MRD ID

NP0165509

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol

Description

(1S,4E,4aS,9S,11aR)-4-{2-[(2R)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1H,3H,4H,4aH,5H,6H,9H,10H,11H,11aH-cyclonona[c]pyran-1,9-diol belongs to the class of organic compounds known as oxanes. Oxanes are compounds containing an oxane (tetrahydropyran) ring, which is a six-member saturated aliphatic heterocycle with one oxygen atom and five carbon atoms. (1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol is found in Ovabunda biseriata. Based on a literature review very few articles have been published on (1S,4E,4aS,9S,11aR)-4-{2-[(2R)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1H,3H,4H,4aH,5H,6H,9H,10H,11H,11aH-cyclonona[c]pyran-1,9-diol.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309032202402D          

 24 26  0  0  1  0            999 V2000
    2.8895    0.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020   -0.1433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1145   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8289   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6042   -0.1303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5468   -1.1877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8289   -1.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6042   -2.2452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1145   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020   -2.2322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -1.6002    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0572   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0572   -2.8377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -3.2502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -4.0752    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3592   -4.7897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1842   -4.7897    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5329   -5.5374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0061   -4.7178    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3428   -1.6002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3428   -0.7752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0572   -0.3627    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0572    0.4623    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -0.7752    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 12 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
 24  2  1  1  0  0  0
 11 24  1  0  0  0  0
M  END


  Mrv1652309032202402D          

 24 26  0  0  1  0            999 V2000
    2.8895    0.5712    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020   -0.1433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1145   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8289   -0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.6042   -0.1303    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5468   -1.1877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8289   -1.9630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6042   -2.2452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1145   -2.3755    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3020   -2.2322    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -1.6002    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0572   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0572   -2.8377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -3.2502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -4.0752    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3592   -4.7897    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1842   -4.7897    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5329   -5.5374    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0061   -4.7178    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3428   -1.6002    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3428   -0.7752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0572   -0.3627    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0572    0.4623    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7717   -0.7752    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  4  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  6  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 12 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  6  0  0  0
 22 24  1  0  0  0  0
 24  2  1  1  0  0  0
 11 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0165509

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C1=C/[C@@H](O)CC(=C)[C@@H]2[C@@H](O)OC\C(=C\C[C@H]3OC3(C)C)[C@H]2CC1

> <INCHI_IDENTIFIER>
InChI=1S/C20H30O4/c1-12-5-7-16-14(6-8-17-20(3,4)24-17)11-23-19(22)18(16)13(2)10-15(21)9-12/h6,9,15-19,21-22H,2,5,7-8,10-11H2,1,3-4H3/b12-9+,14-6-/t15-,16-,17-,18+,19+/m1/s1

> <INCHI_KEY>
BKEVIEYLBYCAMR-OEGJEVASSA-N

> <FORMULA>
C20H30O4

> <MOLECULAR_WEIGHT>
334.456

> <EXACT_MASS>
334.214409446

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
36.96044977803766

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4E,4aS,9S,11aR)-4-{2-[(2R)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1H,3H,4H,4aH,5H,6H,9H,10H,11H,11aH-cyclonona[c]pyran-1,9-diol

> <ALOGPS_LOGP>
1.87

> <JCHEM_LOGP>
2.2157781819999984

> <ALOGPS_LOGS>
-3.30

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
18.23194696479378

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.101533674622488

> <JCHEM_PKA_STRONGEST_BASIC>
-1.3840475239638845

> <JCHEM_POLAR_SURFACE_AREA>
62.22

> <JCHEM_REFRACTIVITY>
95.58750000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.69e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4E,4aS,9S,11aR)-4-{2-[(2R)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1H,3H,4aH,5H,6H,9H,10H,11aH-cyclonona[c]pyran-1,9-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       5.394   1.066   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.164  -0.267   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.680  -0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.014  -0.770   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      10.461  -0.243   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       8.487  -2.217   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.014  -3.664   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.461  -4.191   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.680  -4.434   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.164  -4.167   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.174  -2.987   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.840  -3.757   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.840  -5.297   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.174  -6.067   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.174  -7.607   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       4.404  -8.941   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       5.944  -8.941   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.595 -10.337   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.478  -8.807   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.506  -2.987   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.506  -1.447   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       3.840  -0.677   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       3.840   0.863   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.174  -1.447   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   24                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   24                                                  
CONECT   12   11   13   20                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15   17                                                       
CONECT   17   16   15   18   19                                             
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   12   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22    2   11                                                  
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₀O₄

Average Mass

334.4560 Da

Monoisotopic Mass

334.21441 Da

IUPAC Name

(1S,4E,4aS,9S,11aR)-4-{2-[(2R)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1H,3H,4H,4aH,5H,6H,9H,10H,11H,11aH-cyclonona[c]pyran-1,9-diol

Traditional Name

(1S,4E,4aS,9S,11aR)-4-{2-[(2R)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1H,3H,4aH,5H,6H,9H,10H,11aH-cyclonona[c]pyran-1,9-diol

CAS Registry Number

Not Available

SMILES

C\C1=C/[C@@H](O)CC(=C)[C@@H]2[C@@H](O)OC\C(=C\C[C@H]3OC3(C)C)[C@H]2CC1

InChI Identifier

InChI=1S/C20H30O4/c1-12-5-7-16-14(6-8-17-20(3,4)24-17)11-23-19(22)18(16)13(2)10-15(21)9-12/h6,9,15-19,21-22H,2,5,7-8,10-11H2,1,3-4H3/b12-9+,14-6-/t15-,16-,17-,18+,19+/m1/s1

InChI Key

BKEVIEYLBYCAMR-OEGJEVASSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ovabunda biseriata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oxanes. Oxanes are compounds containing an oxane (tetrahydropyran) ring, which is a six-member saturated aliphatic heterocycle with one oxygen atom and five carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Oxanes

Sub Class

Not Available

Direct Parent

Oxanes

Alternative Parents

Substituents

Oxane
Secondary alcohol
Hemiacetal
Oxacycle
Ether
Oxirane
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.87	ALOGPS
logP	2.22	ChemAxon
logS	-3.3	ALOGPS
pKa (Strongest Acidic)	12.1	ChemAxon
pKa (Strongest Basic)	-1.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	62.22 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	95.59 m³·mol⁻¹	ChemAxon
Polarizability	36.96 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162953132

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol (NP0165509)

MOL for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

3D MOL for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

3D SDF for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

3D-SDF for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

PDB for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

3D PDB for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

SMILES for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

INCHI for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

Structure for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)

3D Structure for NP0165509 ((1s,4e,4as,9s,11ar)-4-{2-[(2r)-3,3-dimethyloxiran-2-yl]ethylidene}-7-methyl-11-methylidene-1h,3h,4ah,5h,6h,9h,10h,11ah-cyclonona[c]pyran-1,9-diol)