NP-MRD: Showing NP-Card for methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate (NP0165402)

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Record Information

Version

2.0

Created at

2022-09-03 00:31:50 UTC

Updated at

2022-09-03 00:31:50 UTC

NP-MRD ID

NP0165402

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate

Description

methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate is found in Euscaphis japonica.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 39  0  0  0  0  0  0  0  0999 V2000
    4.6604    3.0209   -2.1497 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7794    1.9797   -1.7091 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3030    1.9772   -0.4146 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6539    2.8943    0.3562 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3963    0.9182    0.0624 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0645    1.1739    1.4494 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1385    0.9343   -0.7870 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1682   -0.1393   -0.3374 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0374   -0.0837   -1.1922 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0815    0.7951   -2.0962 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1378   -0.9514   -1.0627 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2453   -0.8254   -1.9805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1825   -1.9293   -0.0306 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.1048   -2.7838   -0.0069 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2182   -3.4037    1.2324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5564   -2.2279    2.0955 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1476   -1.3147    1.3427 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6692    0.0115    1.7897 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4452    0.1625    3.1353 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6773    2.7736   -1.8161 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5440    3.1306   -3.2354 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3699    3.9508   -1.5940 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8890   -0.0854   -0.0585 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9007    0.2725    1.9255 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9127    1.5976    1.8961 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4438    0.7688   -1.8345 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6606    1.9236   -0.6426 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6741   -1.1466   -0.4556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0329   -0.0490    0.7383 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0641   -0.2107   -1.5566 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6398   -1.8456   -2.1587 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9146   -0.4442   -2.9785 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1175   -2.5724   -0.1032 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3026   -3.8954    1.5674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0897   -4.1032    1.1730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3341   -2.1698    3.1736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7725    0.0501    1.6308 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1908    0.8580    1.2608 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9517    0.9883    3.3714 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  1  0
 17 13  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  5 23  1  1
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  0
  8 29  1  0
 12 30  1  0
 12 31  1  0
 12 32  1  0
 13 33  1  1
 15 34  1  0
 15 35  1  0
 16 36  1  0
 18 37  1  0
 18 38  1  0
 19 39  1  0
M  END


  Mrv1652309032202312D          

 19 19  0  0  1  0            999 V2000
   -0.5662   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1483   -5.2327    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8628   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8628   -3.9952    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5772   -5.2327    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5772   -6.0577    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2917   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0062   -5.2327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7206   -4.8202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7206   -3.9952    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4351   -5.2327    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4351   -6.0577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1496   -4.8202    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2358   -3.9997    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0428   -3.8282    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4553   -4.5427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9033   -5.1558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0748   -5.9627    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8594   -6.2177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  6  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 13 11  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0165402

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)[C@@H](N)CCC(=O)N(C)[C@H]1OCC=C1CO

> <INCHI_IDENTIFIER>
InChI=1S/C12H20N2O5/c1-14(11-8(7-15)5-6-19-11)10(16)4-3-9(13)12(17)18-2/h5,9,11,15H,3-4,6-7,13H2,1-2H3/t9-,11-/m0/s1

> <INCHI_KEY>
CDAYVDYQRNYMKN-ONGXEEELSA-N

> <FORMULA>
C12H20N2O5

> <MOLECULAR_WEIGHT>
272.301

> <EXACT_MASS>
272.137221752

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
27.730652695794653

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl (2S)-2-amino-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate

> <ALOGPS_LOGP>
-0.96

> <JCHEM_LOGP>
-1.5483750389999993

> <ALOGPS_LOGS>
-1.27

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.037683440550769

> <JCHEM_PKA_STRONGEST_BASIC>
7.183911478021317

> <JCHEM_POLAR_SURFACE_AREA>
102.09

> <JCHEM_REFRACTIVITY>
67.8598

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.47e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (2S)-2-amino-4-{[(2S)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.057  -8.998   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.277  -9.768   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.610  -8.998   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.610  -7.458   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.944  -9.768   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       2.944 -11.308   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       4.278  -8.998   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.612  -9.768   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.945  -8.998   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       6.945  -7.458   0.000  0.00  0.00           O+0
HETATM   11  N   UNK     0       8.279  -9.768   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       8.279 -11.308   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.613  -8.998   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       9.774  -7.466   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      11.280  -7.146   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.050  -8.480   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      11.019  -9.624   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      11.340 -11.130   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      12.804 -11.606   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   13   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₂₀N₂O₅

Average Mass

272.3010 Da

Monoisotopic Mass

272.13722 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

COC(=O)[C@@H](N)CCC(=O)N(C)[C@H]1OCC=C1CO

InChI Identifier

InChI=1S/C12H20N2O5/c1-14(11-8(7-15)5-6-19-11)10(16)4-3-9(13)12(17)18-2/h5,9,11,15H,3-4,6-7,13H2,1-2H3/t9-,11-/m0/s1

InChI Key

CDAYVDYQRNYMKN-ONGXEEELSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Euscaphis japonica	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate (NP0165402)

MOL for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

3D MOL for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

3D SDF for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

3D-SDF for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

PDB for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

3D PDB for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

SMILES for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

INCHI for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

Structure for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)

3D Structure for NP0165402 (methyl (2s)-2-amino-4-{[(2s)-3-(hydroxymethyl)-2,5-dihydrofuran-2-yl](methyl)carbamoyl}butanoate)