NP-MRD: Showing NP-Card for methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate (NP0164167)

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Record Information

Version

2.0

Created at

2022-09-02 22:59:39 UTC

Updated at

2022-09-02 22:59:39 UTC

NP-MRD ID

NP0164167

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate

Description

Gracilioether A belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2. methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate is found in Agelas gracilis. methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate was first documented in 2018 (PMID: 29314833). Based on a literature review very few articles have been published on Gracilioether A.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032200592D          

 25 27  0  0  1  0            999 V2000
    1.0065   -2.2128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6213   -1.4832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0605   -0.7849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7420   -0.0239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3673    0.5143    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6623    0.9427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6808    1.7675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5569    1.3172    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3792    1.3849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8076    2.0900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4113    2.8135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5865    2.8321    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8397    3.5185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4434    4.2421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6977    0.6239    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2634    1.2245    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0663    1.0348    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4764    0.3514    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6297   -0.4592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0044   -0.9973    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1577   -1.8079    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5324   -2.3461    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9364   -2.0805    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2257   -0.7248    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0724    0.0858    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 21 23  1  6  0  0  0
 20 24  1  0  0  0  0
 24  3  1  1  0  0  0
 25 24  1  1  0  0  0
 15 25  1  0  0  0  0
  5 25  1  0  0  0  0
M  END

     RDKit          3D

 55 57  0  0  0  0  0  0  0  0999 V2000
   -4.1282   -0.9079    0.3706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7700   -1.5695    0.4221 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7757   -1.0268   -0.5477 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4809   -1.8080   -0.3523 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3611   -0.9807    0.5453 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4908   -1.4994    1.9580 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1063   -2.8773    1.8852 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6888   -0.9431    0.0350 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1824    0.3631    0.2408 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4272    0.6112    0.5672 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4589   -0.4066    0.7603 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6181   -0.0362    1.0731 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2360   -1.7542    0.6192 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2476   -2.7400    0.8091 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0155    1.2770    0.0063 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1785    2.5397    0.8706 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0345    3.4815    0.6677 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9085    1.6291   -1.2973 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2720    2.1324   -1.5437 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2146    1.0897   -1.6468 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5229    1.6105   -2.1816 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2713    2.3466   -3.4832 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4636    0.6268   -2.3317 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3689    0.4014   -0.3168 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1294    0.4513    0.4890 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.7682   -1.2203    1.2167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6918   -1.2235   -0.5508 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0770    0.1919    0.3103 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4461   -1.5918    1.4756 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9795   -2.6566    0.1792 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1780   -1.1663   -1.5637 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7100   -2.8206    0.0633 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0560   -1.9708   -1.3627 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3908   -1.4132    2.5790 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2818   -0.8566    2.4503 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2771   -3.6094    2.0242 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8163   -3.0518    2.7178 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6390   -3.0457    0.9378 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6732    1.6783    0.6960 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0300   -2.3010    1.4636 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8520   -3.6244    1.3591 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7388   -3.0109   -0.1373 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3771    2.2750    1.9177 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1009    3.0356    0.4839 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0900    4.1577    1.5441 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2642    4.1564   -0.1973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9434    2.9754    0.5421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8233    0.3516   -2.3719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9504    2.3958   -1.4878 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1858    2.5587   -3.5524 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7824    3.3269   -3.5312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5230    1.7094   -4.3680 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3796    0.9950   -2.1951 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2027    0.9628    0.1991 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4291    0.7816    1.5400 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  1
  6  7  1  0
  5  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
  9 15  1  0
 15 16  1  1
 16 17  1  0
 15 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 21 23  1  0
 20 24  1  0
 24 25  1  0
 24  3  1  0
 25  5  1  0
 25 15  1  0
  1 26  1  0
  1 27  1  0
  1 28  1  0
  2 29  1  0
  2 30  1  0
  3 31  1  6
  4 32  1  0
  4 33  1  0
  6 34  1  0
  6 35  1  0
  7 36  1  0
  7 37  1  0
  7 38  1  0
 10 39  1  0
 14 40  1  0
 14 41  1  0
 14 42  1  0
 16 43  1  0
 16 44  1  0
 17 45  1  0
 17 46  1  0
 17 47  1  0
 20 48  1  6
 21 49  1  1
 22 50  1  0
 22 51  1  0
 22 52  1  0
 23 53  1  0
 24 54  1  1
 25 55  1  1
M  END


  Mrv1652309032200592D          

 25 27  0  0  1  0            999 V2000
    1.0065   -2.2128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6213   -1.4832    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0605   -0.7849    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7420   -0.0239    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3673    0.5143    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6623    0.9427    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6808    1.7675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5569    1.3172    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3792    1.3849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8076    2.0900    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4113    2.8135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5865    2.8321    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8397    3.5185    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4434    4.2421    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6977    0.6239    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2634    1.2245    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0663    1.0348    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4764    0.3514    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6297   -0.4592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0044   -0.9973    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1577   -1.8079    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5324   -2.3461    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9364   -2.0805    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2257   -0.7248    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0724    0.0858    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  6  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  1  0  0  0  0
  5  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  9 15  1  0  0  0  0
 15 16  1  6  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 21 23  1  6  0  0  0
 20 24  1  0  0  0  0
 24  3  1  1  0  0  0
 25 24  1  1  0  0  0
 15 25  1  0  0  0  0
  5 25  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0164167

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@@H]1C[C@@]2(CC)O\C(=C/C(=O)OC)[C@@]3(CC)OO[C@H]([C@@H](C)O)[C@@H]1[C@@H]23

> <INCHI_IDENTIFIER>
InChI=1S/C19H30O6/c1-6-12-10-18(7-2)17-15(12)16(11(4)20)24-25-19(17,8-3)13(23-18)9-14(21)22-5/h9,11-12,15-17,20H,6-8,10H2,1-5H3/b13-9-/t11-,12-,15-,16-,17+,18-,19-/m1/s1

> <INCHI_KEY>
HXBJHHAGBLMCAA-VYQOPCACSA-N

> <FORMULA>
C19H30O6

> <MOLECULAR_WEIGHT>
354.443

> <EXACT_MASS>
354.204238686

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
55

> <JCHEM_AVERAGE_POLARIZABILITY>
38.73680330342546

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl 2-[(1S,2Z,4R,6R,7S,8S,11S)-1,4,6-triethyl-8-[(1R)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0^{4,11}]undecan-2-ylidene]acetate

> <ALOGPS_LOGP>
3.60

> <JCHEM_LOGP>
2.7611093013333328

> <ALOGPS_LOGS>
-3.70

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.38992389762685

> <JCHEM_PKA_STRONGEST_BASIC>
-3.065647287178015

> <JCHEM_POLAR_SURFACE_AREA>
74.22000000000001

> <JCHEM_REFRACTIVITY>
92.10260000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.15e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl [(1S,2Z,4R,6R,7S,8S,11S)-1,4,6-triethyl-8-[(1R)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0^{4,11}]undecan-2-ylidene]acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       1.879  -4.131   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.160  -2.769   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.980  -1.465   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.385  -0.045   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.552   0.960   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.236   1.760   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.271   3.299   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.906   2.459   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.441   2.585   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.241   3.901   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.501   5.252   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       2.961   5.287   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       5.301   6.568   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       4.561   7.919   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.036   1.165   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.092   2.286   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.590   1.932   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       6.489   0.656   0.000  0.00  0.00           O+0
HETATM   19  O   UNK     0       6.776  -0.857   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.608  -1.862   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.894  -3.375   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.727  -4.379   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       7.348  -3.884   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       4.155  -1.353   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.868   0.160   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   24                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    8   25                                             
CONECT    6    5    7                                                       
CONECT    7    6                                                            
CONECT    8    5    9                                                       
CONECT    9    8   10   15                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13                                                            
CONECT   15    9   16   18   25                                             
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   15   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   24                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21                                                            
CONECT   24   20    3   25                                                  
CONECT   25   24   15    5                                                  
MASTER        0    0    0    0    0    0    0    0   25    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₃₀O₆

Average Mass

354.4430 Da

Monoisotopic Mass

354.20424 Da

IUPAC Name

methyl 2-[(1S,2Z,4R,6R,7S,8S,11S)-1,4,6-triethyl-8-[(1R)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0^{4,11}]undecan-2-ylidene]acetate

Traditional Name

methyl [(1S,2Z,4R,6R,7S,8S,11S)-1,4,6-triethyl-8-[(1R)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0^{4,11}]undecan-2-ylidene]acetate

CAS Registry Number

Not Available

SMILES

CC[C@@H]1C[C@@]2(CC)O\C(=C/C(=O)OC)[C@@]3(CC)OO[C@H]([C@@H](C)O)[C@@H]1[C@@H]23

InChI Identifier

InChI=1S/C19H30O6/c1-6-12-10-18(7-2)17-15(12)16(11(4)20)24-25-19(17,8-3)13(23-18)9-14(21)22-5/h9,11-12,15-17,20H,6-8,10H2,1-5H3/b13-9-/t11-,12-,15-,16-,17+,18-,19-/m1/s1

InChI Key

HXBJHHAGBLMCAA-VYQOPCACSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Agelas gracilis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 1,2-dioxanes. These are organic compounds containing 1,2-dioxane, an aliphatic six-member ring with two oxygen atoms in ring positions 1 and 2.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Dioxanes

Sub Class

1,2-dioxanes

Direct Parent

1,2-dioxanes

Alternative Parents

Substituents

Ortho-dioxane
Oxolane
Methyl ester
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Vinylogous ester
Carboxylic acid ester
Secondary alcohol
Dialkyl peroxide
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Alcohol
Organic oxide
Organooxygen compound
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.6	ALOGPS
logP	2.76	ChemAxon
logS	-3.7	ALOGPS
pKa (Strongest Acidic)	14.39	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	74.22 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	92.1 m³·mol⁻¹	ChemAxon
Polarizability	38.74 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

27024188

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44131027

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Li Q, Zhao K, Peuronen A, Rissanen K, Enders D, Tang Y: Enantioselective Total Syntheses of (+)-Hippolachnin A, (+)-Gracilioether A, (-)-Gracilioether E, and (-)-Gracilioether F. J Am Chem Soc. 2018 Feb 7;140(5):1937-1944. doi: 10.1021/jacs.7b12903. Epub 2018 Jan 24. [PubMed:29314833 ]
LOTUS database [Link]

Showing NP-Card for methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate (NP0164167)

MOL for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

3D MOL for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

3D SDF for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

3D-SDF for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

PDB for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

3D PDB for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

SMILES for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

INCHI for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

Structure for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)

3D Structure for NP0164167 (methyl 2-[(1s,2z,4r,6r,7s,8s,11s)-1,4,6-triethyl-8-[(1r)-1-hydroxyethyl]-3,9,10-trioxatricyclo[5.3.1.0⁴,¹¹]undecan-2-ylidene]acetate)