NP-MRD: Showing NP-Card for (1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one (NP0163941)

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Record Information

Version

2.0

Created at

2022-09-02 22:43:11 UTC

Updated at

2022-09-02 22:43:11 UTC

NP-MRD ID

NP0163941

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one

Description

(1S,2S,3R,5S,8S,9S,10R,11S,12S)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2R)-3-methyl-5-oxo-2,5-dihydrofuran-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]Tetradecan-7-one belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring. (1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one is found in Eurycoma longifolia. Based on a literature review very few articles have been published on (1S,2S,3R,5S,8S,9S,10R,11S,12S)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2R)-3-methyl-5-oxo-2,5-dihydrofuran-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]Tetradecan-7-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032200432D          

 28 32  0  0  1  0            999 V2000
    2.6715   -1.1741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8646   -1.3456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5290   -2.0993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7085   -2.0131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1565   -2.6262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5370   -1.2061    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2515   -0.7936    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3377    0.0269    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1447   -0.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5127    0.0269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2578    0.8115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4959    1.1470    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5821    1.9675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3358    2.3031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0853    2.4525    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0009    3.2729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8390    2.1169    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8684    2.9414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7651    2.4525    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8805    3.2693    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4326    1.9675    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1862    2.3031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3463    1.1470    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4473    0.3283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0051    2.0810    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1801    2.0810    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9252    1.2964    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5926    0.8115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  1  0  0  0
  8 10  1  1  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 27 26  1  1  0  0  0
 11 27  1  0  0  0  0
 17 27  1  0  0  0  0
 28 27  1  1  0  0  0
 23 28  1  0  0  0  0
  8 28  1  0  0  0  0
M  END

     RDKit          3D

 52 56  0  0  0  0  0  0  0  0999 V2000
    4.6840   -0.1990    0.2370 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6008    0.2470   -0.6526 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6701    0.2734   -1.9703 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4173    0.7726   -2.5309 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0727    0.9513   -3.7215 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5843    1.0467   -1.4565 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2956    0.7270   -0.2460 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4257   -0.2986    0.4548 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0068   -0.7533    1.7391 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2478   -1.5403   -0.4338 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1635   -2.0273   -0.1660 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7915   -2.4779   -1.3492 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3869   -1.5600   -2.2011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3922   -1.8375   -3.4423 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9996   -0.2938   -1.6878 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2667   -0.2205   -2.2847 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1484   -0.4634   -0.2005 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1109   -1.4959   -0.0447 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6715    0.7274    0.5135 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4568    1.5688   -0.5051 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7129    1.6161    1.1838 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.2858    2.5947    0.2806 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4300    0.9358    1.6558 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4217    1.8664    2.1848 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6835   -0.0653    2.5741 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2430   -1.1438    1.9340 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9160   -0.9577    0.4766 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0565    0.2137    0.4671 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5623    0.1173    1.2867 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7975   -1.2998    0.1689 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6843    0.2234   -0.0749 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5030   -0.0188   -2.5875 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2874    1.6382    0.3596 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4077    0.0905    2.3401 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2934   -1.2843    2.3647 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8122   -1.5083    1.4954 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0118   -2.2909   -0.2340 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2542   -1.1914   -1.5045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0492   -2.8893    0.5533 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3921    0.5446   -2.0047 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7762   -1.0049   -1.9076 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9581   -1.1483    0.3084 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4555    0.4317    1.2741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4164    1.1238   -0.7582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6931    2.5206    0.0552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8302    1.8762   -1.3505 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1986    2.1599    2.0225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2059    3.4840    0.7031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0475    2.5849    2.6686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3562   -1.0775    2.1288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9491   -2.1284    2.3342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1094    0.8402   -0.4501 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0
 19 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  1
 23 25  1  0
 25 26  1  0
 27 26  1  1
 27 11  1  0
 11 10  1  0
 10  8  1  0
  8  9  1  1
  8  7  1  0
  7  6  1  0
  6  4  1  0
  4  5  2  0
  4  3  1  0
  3  2  2  0
  2  1  1  0
  8 28  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 13 15  1  0
 15 16  1  0
 15 17  1  0
 17 18  1  6
 17 19  1  0
 28 23  1  0
 28 27  1  0
 17 27  1  0
  2  7  1  0
 20 44  1  0
 20 45  1  0
 20 46  1  0
 19 43  1  1
 21 47  1  1
 22 48  1  0
 24 49  1  0
 26 50  1  0
 26 51  1  0
 11 39  1  1
 10 37  1  0
 10 38  1  0
  9 34  1  0
  9 35  1  0
  9 36  1  0
  7 33  1  1
  3 32  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
 28 52  1  6
 15 40  1  1
 16 41  1  0
 18 42  1  0
M  END


  Mrv1652309032200432D          

 28 32  0  0  1  0            999 V2000
    2.6715   -1.1741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8646   -1.3456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5290   -2.0993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7085   -2.0131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1565   -2.6262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5370   -1.2061    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2515   -0.7936    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3377    0.0269    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1447   -0.1447    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5127    0.0269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2578    0.8115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4959    1.1470    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5821    1.9675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3358    2.3031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0853    2.4525    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0009    3.2729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8390    2.1169    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8684    2.9414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7651    2.4525    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8805    3.2693    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4326    1.9675    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1862    2.3031    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3463    1.1470    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4473    0.3283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0051    2.0810    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1801    2.0810    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9252    1.2964    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5926    0.8115    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  1  1  0  0  0
  8  9  1  1  0  0  0
  8 10  1  1  0  0  0
 11 10  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 15 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 27 26  1  1  0  0  0
 11 27  1  0  0  0  0
 17 27  1  0  0  0  0
 28 27  1  1  0  0  0
 23 28  1  0  0  0  0
  8 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0163941

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1[C@H](O)[C@@]2(O)OC[C@]34[C@H](C[C@@](C)([C@@H]5OC(=O)C=C5C)[C@H]23)OC(=O)[C@@H](O)[C@]14O

> <INCHI_IDENTIFIER>
InChI=1S/C19H24O9/c1-7-4-10(20)28-13(7)16(3)5-9-17-6-26-19(25,15(16)17)11(21)8(2)18(17,24)12(22)14(23)27-9/h4,8-9,11-13,15,21-22,24-25H,5-6H2,1-3H3/t8-,9+,11+,12-,13-,15+,16+,17+,18-,19-/m1/s1

> <INCHI_KEY>
WVSIBFDYALDOEO-NAGDPZCQSA-N

> <FORMULA>
C19H24O9

> <MOLECULAR_WEIGHT>
396.392

> <EXACT_MASS>
396.142032353

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
37.33681138674929

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,3R,5S,8S,9S,10R,11S,12S)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2R)-3-methyl-5-oxo-2,5-dihydrofuran-2-yl]-6,13-dioxatetracyclo[7.5.0.0^{1,5}.0^{2,12}]tetradecan-7-one

> <ALOGPS_LOGP>
-0.56

> <JCHEM_LOGP>
-1.0868297976666663

> <ALOGPS_LOGS>
-1.39

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
10.841779889928743

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.628478034946754

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6917880337805435

> <JCHEM_POLAR_SURFACE_AREA>
142.75

> <JCHEM_REFRACTIVITY>
90.37830000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.61e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,3R,5S,8S,9S,10R,11S,12S)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2R)-3-methyl-5-oxo-2H-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0^{1,5}.0^{2,12}]tetradecan-7-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       4.987  -2.192   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.481  -2.512   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.854  -3.919   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.323  -3.758   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.292  -4.902   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0       1.002  -2.251   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       2.336  -1.481   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.497   0.050   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.003  -0.270   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.957   0.050   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.481   1.515   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.926   2.141   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.087   3.673   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -2.494   4.299   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       0.159   4.578   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -0.002   6.109   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.566   3.952   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       1.621   5.491   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       3.295   4.578   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.510   6.103   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.541   3.673   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       5.948   4.299   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       4.380   2.141   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       4.568   0.613   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       3.743   3.885   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.203   3.885   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.727   2.420   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.973   1.515   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7    9   10   28                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   27                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19   27                                             
CONECT   18   17                                                            
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25   28                                             
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   11   17   28                                             
CONECT   28   27   23    8                                                  
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₄O₉

Average Mass

396.3920 Da

Monoisotopic Mass

396.14203 Da

IUPAC Name

(1S,2S,3R,5S,8S,9S,10R,11S,12S)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2R)-3-methyl-5-oxo-2,5-dihydrofuran-2-yl]-6,13-dioxatetracyclo[7.5.0.0^{1,5}.0^{2,12}]tetradecan-7-one

Traditional Name

(1S,2S,3R,5S,8S,9S,10R,11S,12S)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2R)-3-methyl-5-oxo-2H-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0^{1,5}.0^{2,12}]tetradecan-7-one

CAS Registry Number

Not Available

SMILES

C[C@@H]1[C@H](O)[C@@]2(O)OC[C@]34[C@H](C[C@@](C)([C@@H]5OC(=O)C=C5C)[C@H]23)OC(=O)[C@@H](O)[C@]14O

InChI Identifier

InChI=1S/C19H24O9/c1-7-4-10(20)28-13(7)16(3)5-9-17-6-26-19(25,15(16)17)11(21)8(2)18(17,24)12(22)14(23)27-9/h4,8-9,11-13,15,21-22,24-25H,5-6H2,1-3H3/t8-,9+,11+,12-,13-,15+,16+,17+,18-,19-/m1/s1

InChI Key

WVSIBFDYALDOEO-NAGDPZCQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Eurycoma longifolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as quassinoids. These are a group of compounds chemically degraded from triterpenes. According to their basic skeleton, quassinoids are categorized into five distinct groups, C-18, C-19, C-20, C-22 and C-25 types. The C-20 quassinoids can be further classified into two types, tetracyclic and the pentacyclic. The tetracyclic variety does not have oxygenation at C-20, while the pentacyclic quassinoids possess additional oxygenation at C-20 that allows for the formation of an additional ring.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Quassinoids

Alternative Parents

Substituents

Quassinoid
Delta valerolactone
Delta_valerolactone
Oxepane
2-furanone
Dicarboxylic acid or derivatives
Oxane
Tetrahydrofuran
Tertiary alcohol
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Cyclic alcohol
Dihydrofuran
Secondary alcohol
Carboxylic acid ester
Hemiacetal
Lactone
Oxacycle
Polyol
Organoheterocyclic compound
Carboxylic acid derivative
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Carbonyl group
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.56	ALOGPS
logP	-1.1	ChemAxon
logS	-1.4	ALOGPS
pKa (Strongest Acidic)	7.63	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	142.75 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	90.38 m³·mol⁻¹	ChemAxon
Polarizability	37.34 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162845674

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one (NP0163941)

MOL for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

3D MOL for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

3D SDF for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

3D-SDF for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

PDB for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

3D PDB for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

SMILES for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

INCHI for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

Structure for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)

3D Structure for NP0163941 ((1s,2s,3r,5s,8s,9s,10r,11s,12s)-8,9,11,12-tetrahydroxy-3,10-dimethyl-3-[(2r)-3-methyl-5-oxo-2h-furan-2-yl]-6,13-dioxatetracyclo[7.5.0.0¹,⁵.0²,¹²]tetradecan-7-one)