NP-MRD: Showing NP-Card for 7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione (NP0163776)

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Record Information

Version

2.0

Created at

2022-09-02 22:30:58 UTC

Updated at

2022-09-02 22:30:59 UTC

NP-MRD ID

NP0163776

Secondary Accession Numbers

None

Natural Product Identification

Common Name

7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione

Description

7-[(4,5-Dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-5,7,8,9,10,12-hexahydrotetracene-5,12-dione belongs to the class of organic compounds known as anthracyclines. These are polyketides containing a tetracenequinone ring structure with a sugar attached by glycosidic linkage. 7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione is found in Streptomyces steffisburgensis. Based on a literature review very few articles have been published on 7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-5,7,8,9,10,12-hexahydrotetracene-5,12-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309032200312D          

 37 41  0  0  0  0            999 V2000
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M  END

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  Mrv1652309032200312D          

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 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 22 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 20 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 34 37  1  0  0  0  0
 13 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0163776

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1C(O)C(O)C(C)OC1OC1CC(C)(O)CC2=C1C(O)=C1C(=O)C3=CC=C(OC)C=C3C(=O)C1=C2

> <INCHI_IDENTIFIER>
InChI=1S/C27H30O10/c1-11-20(28)24(32)25(35-4)26(36-11)37-17-10-27(2,33)9-12-7-16-19(23(31)18(12)17)22(30)14-6-5-13(34-3)8-15(14)21(16)29/h5-8,11,17,20,24-26,28,31-33H,9-10H2,1-4H3

> <INCHI_KEY>
JYMWOUKWJGOFQS-UHFFFAOYSA-N

> <FORMULA>
C27H30O10

> <MOLECULAR_WEIGHT>
514.527

> <EXACT_MASS>
514.183897166

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
53.82035788524016

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-5,7,8,9,10,12-hexahydrotetracene-5,12-dione

> <ALOGPS_LOGP>
1.54

> <JCHEM_LOGP>
2.069177586333332

> <ALOGPS_LOGS>
-3.17

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.750294788206464

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.8403945027197235

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8973441295450293

> <JCHEM_POLAR_SURFACE_AREA>
151.98

> <JCHEM_REFRACTIVITY>
130.47770000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.44e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7H-tetracene-5,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0      -6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -5.335  -7.700   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -0.000  -9.240   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       2.667  -3.080   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -0.000  -3.080   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       6.668  -0.770   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      10.669   0.000   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      10.669  -3.080   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       8.002  -3.080   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       8.002  -4.620   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       8.185  -6.663   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       7.195  -8.377   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   18                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    3                                                       
CONECT    9    7   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   37                                                  
CONECT   14   13   15   20                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   11   18                                                  
CONECT   18   17    6   19                                                  
CONECT   19   18                                                            
CONECT   20   14   21   33                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   30                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   22   31                                                  
CONECT   31   30   32                                                       
CONECT   32   31                                                            
CONECT   33   20   34                                                       
CONECT   34   33   35   36   37                                             
CONECT   35   34                                                            
CONECT   36   34                                                            
CONECT   37   34   13                                                       
MASTER        0    0    0    0    0    0    0    0   37    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₀O₁₀

Average Mass

514.5270 Da

Monoisotopic Mass

514.18390 Da

IUPAC Name

7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-5,7,8,9,10,12-hexahydrotetracene-5,12-dione

Traditional Name

7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7H-tetracene-5,12-dione

CAS Registry Number

Not Available

SMILES

COC1C(O)C(O)C(C)OC1OC1CC(C)(O)CC2=C1C(O)=C1C(=O)C3=CC=C(OC)C=C3C(=O)C1=C2

InChI Identifier

InChI=1S/C27H30O10/c1-11-20(28)24(32)25(35-4)26(36-11)37-17-10-27(2,33)9-12-7-16-19(23(31)18(12)17)22(30)14-6-5-13(34-3)8-15(14)21(16)29/h5-8,11,17,20,24-26,28,31-33H,9-10H2,1-4H3

InChI Key

JYMWOUKWJGOFQS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces steffisburgensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as anthracyclines. These are polyketides containing a tetracenequinone ring structure with a sugar attached by glycosidic linkage.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Anthracyclines

Sub Class

Not Available

Direct Parent

Anthracyclines

Alternative Parents

Substituents

Anthracycline
Anthracyclinone-skeleton
Tetracenequinone
9,10-anthraquinone
1,4-anthraquinone
Anthracene
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Tetralin
Aryl ketone
Anisole
1-hydroxy-4-unsubstituted benzenoid
Alkyl aryl ether
Oxane
Benzenoid
Monosaccharide
Vinylogous acid
Tertiary alcohol
Secondary alcohol
Ketone
Dialkyl ether
Organoheterocyclic compound
Oxacycle
Ether
Acetal
Organooxygen compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.54	ALOGPS
logP	2.07	ChemAxon
logS	-3.2	ALOGPS
pKa (Strongest Acidic)	7.84	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	151.98 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	130.48 m³·mol⁻¹	ChemAxon
Polarizability	53.82 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162983939

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione (NP0163776)

MOL for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

3D MOL for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

3D SDF for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

3D-SDF for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

PDB for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

3D PDB for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

SMILES for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

INCHI for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

Structure for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)

3D Structure for NP0163776 (7-[(4,5-dihydroxy-3-methoxy-6-methyloxan-2-yl)oxy]-6,9-dihydroxy-2-methoxy-9-methyl-8,10-dihydro-7h-tetracene-5,12-dione)