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Record Information
Version2.0
Created at2022-09-02 22:28:17 UTC
Updated at2022-09-02 22:28:17 UTC
NP-MRD IDNP0163748
Secondary Accession NumbersNone
Natural Product Identification
Common Name(e,2e,4e,6s,7s,8r,9s,10e)-7,9-dimethoxy-n-[(1z)-5-[(2-methoxy-2-oxoethyl)-c-hydroxycarbonimidoyl]pent-1-en-1-yl]-3,6,8-trimethyl-11-phenylundeca-2,4,10-trienimidic acid
DescriptionCrocacin D belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. (e,2e,4e,6s,7s,8r,9s,10e)-7,9-dimethoxy-n-[(1z)-5-[(2-methoxy-2-oxoethyl)-c-hydroxycarbonimidoyl]pent-1-en-1-yl]-3,6,8-trimethyl-11-phenylundeca-2,4,10-trienimidic acid is found in Chondromyces crocatus. (e,2e,4e,6s,7s,8r,9s,10e)-7,9-dimethoxy-n-[(1z)-5-[(2-methoxy-2-oxoethyl)-c-hydroxycarbonimidoyl]pent-1-en-1-yl]-3,6,8-trimethyl-11-phenylundeca-2,4,10-trienimidic acid was first documented in 2005 (PMID: 15760209). Based on a literature review a small amount of articles have been published on Crocacin D (PMID: 25638500) (PMID: 18996700).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC31H44N2O6
Average Mass540.7010 Da
Monoisotopic Mass540.31994 Da
IUPAC Name(E,2E,4E,6S,7S,8R,9S,10E)-7,9-dimethoxy-N-[(1Z)-5-[(2-methoxy-2-oxoethyl)-C-hydroxycarbonimidoyl]pent-1-en-1-yl]-3,6,8-trimethyl-11-phenylundeca-2,4,10-trienimidic acid
Traditional Name(E,2E,4E,6S,7S,8R,9S,10E)-7,9-dimethoxy-N-[(1Z)-5-[(2-methoxy-2-oxoethyl)-C-hydroxycarbonimidoyl]pent-1-en-1-yl]-3,6,8-trimethyl-11-phenylundeca-2,4,10-trienimidic acid
CAS Registry NumberNot Available
SMILES
CO[C@@H](\C=C\C1=CC=CC=C1)[C@@H](C)[C@@H](OC)[C@@H](C)\C=C\C(\C)=C\C(\O)=N/C=C\CCCC(O)=NCC(=O)OC
InChI Identifier
InChI=1S/C31H44N2O6/c1-23(21-29(35)32-20-12-8-11-15-28(34)33-22-30(36)38-5)16-17-24(2)31(39-6)25(3)27(37-4)19-18-26-13-9-7-10-14-26/h7,9-10,12-14,16-21,24-25,27,31H,8,11,15,22H2,1-6H3,(H,32,35)(H,33,34)/b17-16+,19-18+,20-12-,23-21+/t24-,25+,27-,31-/m0/s1
InChI KeyYIOSSWUAQNGRSJ-NRHCNNMKSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Chondromyces crocatusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid ester
  • N-acyl-alpha amino acid or derivatives
  • Styrene
  • Monocyclic benzene moiety
  • Fatty amide
  • N-acyl-amine
  • Fatty acyl
  • Benzenoid
  • Methyl ester
  • Carboxylic acid ester
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Organooxygen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Organic oxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.11ALOGPS
logP4.35ChemAxon
logS-6.6ALOGPS
pKa (Strongest Acidic)4.97ChemAxon
pKa (Strongest Basic)7.16ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area109.94 ŲChemAxon
Rotatable Bond Count18ChemAxon
Refractivity158.08 m³·mol⁻¹ChemAxon
Polarizability60.69 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8705893
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10530498
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Pasqua AE, Ferrari FD, Crawford JJ, Whittingham WG, Marquez R: Synthesis of (+)-crocacin D and simplified bioactive analogues. Bioorg Med Chem. 2015 Mar 1;23(5):1062-8. doi: 10.1016/j.bmc.2015.01.008. Epub 2015 Jan 10. [PubMed:25638500 ]
  2. Crowley PJ, Berry EA, Cromartie T, Daldal F, Godfrey CR, Lee DW, Phillips JE, Taylor A, Viner R: The role of molecular modeling in the design of analogues of the fungicidal natural products crocacins A and D. Bioorg Med Chem. 2008 Dec 15;16(24):10345-55. doi: 10.1016/j.bmc.2008.10.030. Epub 2008 Oct 17. [PubMed:18996700 ]
  3. Dias LC, de Oliveira LG, Vilcachagua JD, Nigsch F: Total synthesis of (+)-crocacin D. J Org Chem. 2005 Mar 18;70(6):2225-34. doi: 10.1021/jo047732k. [PubMed:15760209 ]
  4. LOTUS database [Link]