NP-MRD: Showing NP-Card for [2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid (NP0163446)

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Record Information

Version

1.0

Created at

2022-09-02 22:05:24 UTC

Updated at

2022-09-02 22:05:24 UTC

NP-MRD ID

NP0163446

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid

Description

2-[2-(4-Hydroxy-4-methylpentyl)cyclopropyl]acetic acid belongs to the class of organic compounds known as tertiary alcohols. Tertiary alcohols are compounds in which a hydroxy group, -OH, is attached to a saturated carbon atom R3COH (R not H ). It was first documented in 2022 (PMID: 36057450). Based on a literature review a significant number of articles have been published on 2-[2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid (PMID: 36057449) (PMID: 36057448) (PMID: 36057447) (PMID: 36057446).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 34 34  0  0  0  0  0  0  0  0999 V2000
   -4.1317    1.0001    0.4916 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8020    0.5933   -0.2054 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0780   -0.7871   -0.7526 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6239    1.4615   -1.2545 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7803    0.6706    0.8648 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3734    0.3720    0.5449 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0816   -0.9789    0.0294 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3773   -1.2392   -0.2508 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9807   -0.2886   -1.2948 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4497   -0.3517    0.1571 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.8259   -0.9630    0.3163 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8304    0.0353    0.7331 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0112   -0.3663    0.8951 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5617    1.3720    0.9556 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8207    1.4114   -0.2663 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9243    1.6978    1.3221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5764    0.0872    0.9359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2026   -0.9563   -0.8344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7492   -0.8847   -1.8172 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7319   -1.6085   -0.1293 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6611    2.4171   -1.0113 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9067    1.6920    1.3433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0984   -0.0250    1.6815 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0507    1.1434   -0.2281 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2378    0.6592    1.4320 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5918   -1.1212   -0.9644 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4970   -1.7478    0.7045 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6098   -2.3096   -0.4286 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6278   -0.7225   -2.0788 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3938    0.5799   -1.6163 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3124    0.5619    0.7647 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8123   -1.7639    1.0958 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1929   -1.4283   -0.6272 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4580    1.7877    1.8713 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  2  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 14  1  0
 12 13  2  0
 10  8  1  0
  1 15  1  0
  1 16  1  0
  1 17  1  0
  3 18  1  0
  3 19  1  0
  3 20  1  0
  4 21  1  0
  5 22  1  0
  5 23  1  0
  6 24  1  0
  6 25  1  0
  7 26  1  0
  7 27  1  0
  8 28  1  6
  9 29  1  0
  9 30  1  0
 10 31  1  1
 11 32  1  0
 11 33  1  0
 14 34  1  0
M  END


  Mrv1652309032200052D          

 14 14  0  0  0  0            999 V2000
    2.3816    3.7763    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6671    3.3638    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2546    4.0783    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0796    2.6493    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9526    2.9513    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9526    2.1263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2382    1.7138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2382    0.8888    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6507    0.1743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1743    0.1743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8888   -0.2382    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6033    0.1743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3178   -0.2382    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6033    0.9993    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0163446

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)(O)CCCC1CC1CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H20O3/c1-11(2,14)5-3-4-8-6-9(8)7-10(12)13/h8-9,14H,3-7H2,1-2H3,(H,12,13)

> <INCHI_KEY>
PBXVPNFFTUVJNS-UHFFFAOYSA-N

> <FORMULA>
C11H20O3

> <MOLECULAR_WEIGHT>
200.278

> <EXACT_MASS>
200.141244504

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
22.880791363107264

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid

> <ALOGPS_LOGP>
2.35

> <JCHEM_LOGP>
1.6262501589999991

> <ALOGPS_LOGS>
-2.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
18.53076842165985

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.853338832220724

> <JCHEM_PKA_STRONGEST_BASIC>
-1.2544422791642424

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
53.9553

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.13e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 03-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-SEP-22         0                                  
HETATM    1  C   UNK     0       4.446   7.049   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.112   6.279   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.342   7.613   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.882   4.945   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       1.778   5.509   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.778   3.969   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.445   3.199   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.445   1.659   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.215   0.325   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -0.325   0.325   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.659  -0.445   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -2.993   0.325   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -4.326  -0.445   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0      -2.993   1.865   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4    5                                             
CONECT    3    2                                                            
CONECT    4    2                                                            
CONECT    5    2    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8   10                                                       
CONECT   10    9    8   11                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END

View in JSmol

Synonyms

Value	Source
2-[2-(4-Hydroxy-4-methylpentyl)cyclopropyl]acetate	Generator

Chemical Formula

C₁₁H₂₀O₃

Average Mass

200.2780 Da

Monoisotopic Mass

200.14124 Da

IUPAC Name

2-[2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid

Traditional Name

[2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid

CAS Registry Number

Not Available

SMILES

CC(C)(O)CCCC1CC1CC(O)=O

InChI Identifier

InChI=1S/C11H20O3/c1-11(2,14)5-3-4-8-6-9(8)7-10(12)13/h8-9,14H,3-7H2,1-2H3,(H,12,13)

InChI Key

PBXVPNFFTUVJNS-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tertiary alcohols. Tertiary alcohols are compounds in which a hydroxy group, -OH, is attached to a saturated carbon atom R3COH (R not H ).

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Alcohols and polyols

Direct Parent

Tertiary alcohols

Alternative Parents

Substituents

Tertiary alcohol
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxide
Hydrocarbon derivative
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.35	ALOGPS
logP	1.63	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	4.85	ChemAxon
pKa (Strongest Basic)	-1.3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	53.96 m³·mol⁻¹	ChemAxon
Polarizability	22.88 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163112170

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Micalizzi E, Vaudano AE, Ballerini A, Talami F, Giovannini G, Turchi G, Cioclu MC, Giunta L, Meletti S: Ictal Apnea: a prospective monocentric study in patients with epilepsy. Eur J Neurol. 2022 Sep 3. doi: 10.1111/ene.15547. [PubMed:36057450 ]
Jiang S, Guo P, Heo HY, Zhang Y, Wu J, Jin Y, Laterra J, Eberhart CG, Lim M, Blakeley JO: Radiomics analysis of amide proton transfer-weighted and structural MR images for treatment response assessment in malignant gliomas. NMR Biomed. 2022 Sep 3:e4824. doi: 10.1002/nbm.4824. [PubMed:36057449 ]
Agarwal K, Saikia P, Podder I: Metabolic syndrome and Dyslipidemia in xanthelasma palpebrarum and associated risk-factors- a case-control study. J Cosmet Dermatol. 2022 Sep 3. doi: 10.1111/jocd.15353. [PubMed:36057448 ]
Lebel V, Argiropoulos N, Robins S, Charbonneau L, Feeley N: Family-centred care and breastfeeding self-efficacy determined how ready mothers were for their infants to be discharged from a neonatal intensive care unit. Acta Paediatr. 2022 Sep 3. doi: 10.1111/apa.16538. [PubMed:36057447 ]
Park JI, Kim SJ, Kim YJ, Lee SJ: Protective role of Caesalpinia sappan extract and its main component brazilin against blue light-induced damage in human fibroblasts. J Cosmet Dermatol. 2022 Sep 3. doi: 10.1111/jocd.15354. [PubMed:36057446 ]
LOTUS database [Link]

Showing NP-Card for [2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid (NP0163446)

MOL for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

3D MOL for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

3D SDF for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

3D-SDF for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

PDB for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

3D PDB for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

SMILES for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

INCHI for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

Structure for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)

3D Structure for NP0163446 ([2-(4-hydroxy-4-methylpentyl)cyclopropyl]acetic acid)