NP-MRD: Showing NP-Card for (3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol (NP0162583)

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Record Information

Version

2.0

Created at

2022-09-02 21:00:53 UTC

Updated at

2022-09-02 21:00:53 UTC

NP-MRD ID

NP0162583

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol

Description

(3S,6S,9S,12S)-3,9-bis[(2S)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds. (3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol is found in Halobacillus litoralis. Based on a literature review very few articles have been published on (3S,6S,9S,12S)-3,9-bis[(2S)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022223002D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309022223002D          

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 25 30  1  0  0  0  0
 30 31  2  0  0  0  0
  5 31  1  0  0  0  0
 31 32  1  4  0  0  0
M  END
> <DATABASE_ID>
NP0162583

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@H](C)[C@@H]1N=C(O)[C@H](CC(C)C)N=C(O)[C@@H](N=C(O)[C@H](CC(C)C)N=C1O)[C@@H](C)CC

> <INCHI_IDENTIFIER>
InChI=1S/C24H44N4O4/c1-9-15(7)19-23(31)25-18(12-14(5)6)22(30)28-20(16(8)10-2)24(32)26-17(11-13(3)4)21(29)27-19/h13-20H,9-12H2,1-8H3,(H,25,31)(H,26,32)(H,27,29)(H,28,30)/t15-,16-,17-,18-,19-,20-/m0/s1

> <INCHI_KEY>
TWIWKKDPZSBUKF-RABCQHRBSA-N

> <FORMULA>
C24H44N4O4

> <MOLECULAR_WEIGHT>
452.64

> <EXACT_MASS>
452.336255913

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
76

> <JCHEM_AVERAGE_POLARIZABILITY>
51.396632602342414

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,6S,9S,12S)-3,9-bis[(2S)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol

> <ALOGPS_LOGP>
3.60

> <JCHEM_LOGP>
0.9329213094814173

> <ALOGPS_LOGS>
-4.28

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
-8.102138660935058

> <JCHEM_PKA_STRONGEST_ACIDIC>
-8.765177535933084

> <JCHEM_PKA_STRONGEST_BASIC>
15.123005166958503

> <JCHEM_POLAR_SURFACE_AREA>
130.36

> <JCHEM_REFRACTIVITY>
125.81679999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.37e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6S,9S,12S)-3,9-bis[(2S)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       1.334   7.645   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.104   6.311   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334   4.977   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.206   4.977   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.104   3.644   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       1.334   2.310   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   14  N   UNK     0       1.334  -0.770   0.000  0.00  0.00           N+0
HETATM   15  C   UNK     0       2.104  -2.104   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       1.334  -3.437   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       3.644  -2.104   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.414  -3.437   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.954  -3.437   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.644  -4.771   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.414  -6.105   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0       4.414  -0.770   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       5.747   0.000   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.081  -0.770   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       5.747   1.540   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.081   2.310   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.081   3.850   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.747   4.620   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       8.415   4.620   0.000  0.00  0.00           C+0
HETATM   30  N   UNK     0       4.414   2.310   0.000  0.00  0.00           N+0
HETATM   31  C   UNK     0       3.644   3.644   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       4.414   4.977   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   31                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    9   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   22                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20                                                            
CONECT   22   17   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   30                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   25   31                                                       
CONECT   31   30    5   32                                                  
CONECT   32   31                                                            
MASTER        0    0    0    0    0    0    0    0   32    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₄H₄₄N₄O₄

Average Mass

452.6400 Da

Monoisotopic Mass

452.33626 Da

IUPAC Name

(3S,6S,9S,12S)-3,9-bis[(2S)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol

Traditional Name

(3S,6S,9S,12S)-3,9-bis[(2S)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol

CAS Registry Number

Not Available

SMILES

CC[C@H](C)[C@@H]1N=C(O)[C@H](CC(C)C)N=C(O)[C@@H](N=C(O)[C@H](CC(C)C)N=C1O)[C@@H](C)CC

InChI Identifier

InChI=1S/C24H44N4O4/c1-9-15(7)19-23(31)25-18(12-14(5)6)22(30)28-20(16(8)10-2)24(32)26-17(11-13(3)4)21(29)27-19/h13-20H,9-12H2,1-8H3,(H,25,31)(H,26,32)(H,27,29)(H,28,30)/t15-,16-,17-,18-,19-,20-/m0/s1

InChI Key

TWIWKKDPZSBUKF-RABCQHRBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Halobacillus litoralis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Oligopeptides

Alternative Parents

Substituents

Alpha-oligopeptide
Cyclic alpha peptide
Macrolactam
Alpha-amino acid or derivatives
Carboxamide group
Lactam
Secondary carboxylic acid amide
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Organonitrogen compound
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.6	ALOGPS
logP	0.93	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Acidic)	-8.8	ChemAxon
pKa (Strongest Basic)	15.12	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	130.36 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	125.82 m³·mol⁻¹	ChemAxon
Polarizability	51.4 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

9136625

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10961409

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol (NP0162583)

MOL for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

3D MOL for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

3D SDF for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

3D-SDF for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

PDB for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

3D PDB for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

SMILES for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

INCHI for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

Structure for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)

3D Structure for NP0162583 ((3s,6s,9s,12s)-3,9-bis[(2s)-butan-2-yl]-6,12-bis(2-methylpropyl)-1,4,7,10-tetraazacyclododeca-1,4,7,10-tetraene-2,5,8,11-tetrol)