NP-MRD: Showing NP-Card for (1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione (NP0162391)

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Record Information

Version

2.0

Created at

2022-09-02 20:46:24 UTC

Updated at

2022-09-02 20:46:24 UTC

NP-MRD ID

NP0162391

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione

Description

Pamamycin 607 belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. (1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione is found in Streptomyces alboniger. (1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione was first documented in 2004 (PMID: 15317744). Based on a literature review a small amount of articles have been published on Pamamycin 607 (PMID: 23154487) (PMID: 21897037) (PMID: 17683030) (PMID: 15725656).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022222462D          

 43 46  0  0  1  0            999 V2000
    7.3668    3.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9968    2.6252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4503    1.9360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0803    1.1987    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7313    0.6919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1388   -0.0254    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3378   -0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2781   -1.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0422   -1.3568    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5742   -0.7262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5150   -2.2905    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.0991   -2.8731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7976   -2.6980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0574   -3.4811    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9790   -2.8000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1836   -2.5809    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8135   -3.3183    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9900   -3.3665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2671   -4.0074    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0912   -4.0456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3096   -4.8411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6205   -5.2947    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5824   -6.1188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8496   -6.4978    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8115   -7.3219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0787   -7.7010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0405   -8.5251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1549   -6.0527    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4222   -6.4318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1931   -5.2286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9762   -4.7794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5326   -2.0741    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9085   -2.6138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1251   -1.3568    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3609   -1.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4206   -0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2216   -0.0254    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6570   -0.7262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7489    0.9082    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1648    1.4909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4663    1.3158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2065    2.0988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2849    1.4177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  6 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  1  0  0  0
 19 17  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 24 28  1  1  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 22 31  1  0  0  0  0
 19 31  1  0  0  0  0
 16 32  1  0  0  0  0
 32 33  1  6  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  6  0  0  0
 34 38  1  6  0  0  0
 37 39  1  0  0  0  0
 39 40  1  1  0  0  0
 39 41  1  0  0  0  0
 41 42  2  0  0  0  0
 41 43  1  0  0  0  0
  4 43  1  0  0  0  0
M  END

     RDKit          3D

104107  0  0  0  0  0  0  0  0999 V2000
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   -5.4498    1.0697   -1.0463 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.0651    3.4119    1.4283 C   0  0  0  0  0  0  0  0  0  0  0  0
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    8.4338   -0.0945   -0.3437 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.9179   -0.1881   -1.6783 C   0  0  0  0  0  0  0  0  0  0  0  0
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 26 80  1  0
 26 81  1  0
 25 78  1  0
 25 79  1  0
 24 77  1  1
 23 75  1  0
 23 76  1  0
 22 74  1  6
 21 72  1  0
 21 73  1  0
 20 70  1  0
 20 71  1  0
 19 69  1  6
 17 65  1  1
 18 66  1  0
 18 67  1  0
 18 68  1  0
 16 64  1  6
 11 60  1  1
 12 61  1  0
 12 62  1  0
 12 63  1  0
  9 59  1  1
  8 57  1  0
  8 58  1  0
  7 55  1  0
  7 56  1  0
  6 54  1  1
  5 52  1  0
  5 53  1  0
  4 51  1  6
  3 49  1  0
  3 50  1  0
  2 47  1  0
  2 48  1  0
  1 44  1  0
  1 45  1  0
  1 46  1  0
 39101  1  6
 40102  1  0
 40103  1  0
 40104  1  0
 37100  1  6
 36 98  1  0
 36 99  1  0
 35 96  1  0
 35 97  1  0
 34 95  1  6
 32 91  1  6
 33 92  1  0
 33 93  1  0
 33 94  1  0
 29 85  1  0
 29 86  1  0
 29 87  1  0
 30 88  1  0
 30 89  1  0
 30 90  1  0
M  END


  Mrv1652309022222462D          

 43 46  0  0  1  0            999 V2000
    7.3668    3.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9968    2.6252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4503    1.9360    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0803    1.1987    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.7313    0.6919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1388   -0.0254    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.3378   -0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2781   -1.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0422   -1.3568    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.5742   -0.7262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5150   -2.2905    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.0991   -2.8731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7976   -2.6980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0574   -3.4811    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9790   -2.8000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1836   -2.5809    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8135   -3.3183    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9900   -3.3665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2671   -4.0074    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.0912   -4.0456    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3096   -4.8411    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6205   -5.2947    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.5824   -6.1188    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8496   -6.4978    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.8115   -7.3219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0787   -7.7010    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0405   -8.5251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1549   -6.0527    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4222   -6.4318    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1931   -5.2286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9762   -4.7794    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5326   -2.0741    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9085   -2.6138    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1251   -1.3568    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.3609   -1.0458    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4206   -0.2229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2216   -0.0254    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6570   -0.7262    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7489    0.9082    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1648    1.4909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4663    1.3158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2065    2.0988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2849    1.4177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  1  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  6 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  1  0  0  0
 17 18  1  1  0  0  0
 19 17  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 24 28  1  1  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
 22 31  1  0  0  0  0
 19 31  1  0  0  0  0
 16 32  1  0  0  0  0
 32 33  1  6  0  0  0
 32 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  6  0  0  0
 34 38  1  6  0  0  0
 37 39  1  0  0  0  0
 39 40  1  1  0  0  0
 39 41  1  0  0  0  0
 41 42  2  0  0  0  0
 41 43  1  0  0  0  0
  4 43  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0162391

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC[C@H](C[C@@H]1CC[C@@H](O1)[C@@H](C)[C@@H]1OC(=O)[C@@H](C)[C@H]2CC[C@@H](C[C@H](CCC)OC(=O)[C@H](C)[C@H]3CC[C@H](O3)[C@H]1C)O2)N(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C35H61NO7/c1-9-11-25(36(7)8)19-27-13-15-29(39-27)21(3)33-22(4)30-17-18-32(42-30)24(6)34(37)41-26(12-10-2)20-28-14-16-31(40-28)23(5)35(38)43-33/h21-33H,9-20H2,1-8H3/t21-,22-,23+,24-,25-,26+,27+,28+,29-,30+,31-,32-,33+/m1/s1

> <INCHI_KEY>
AHOIPAFUOXGGQB-IKNPUDIKSA-N

> <FORMULA>
C35H61NO7

> <MOLECULAR_WEIGHT>
607.873

> <EXACT_MASS>
607.444803308

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
70.19159999030072

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,5S,6R,7S,10R,11R,14S,16S)-5-[(1R)-1-[(2R,5S)-5-[(2R)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

> <ALOGPS_LOGP>
5.75

> <JCHEM_LOGP>
6.287050889333333

> <ALOGPS_LOGS>
-5.99

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
10.00091040414133

> <JCHEM_POLAR_SURFACE_AREA>
83.53000000000002

> <JCHEM_REFRACTIVITY>
167.10119999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.23e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,5S,6R,7S,10R,11R,14S,16S)-5-[(1R)-1-[(2R,5S)-5-[(2R)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      13.751   6.277   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      13.061   4.900   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      13.907   3.614   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      13.217   2.238   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.432   1.292   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      15.192  -0.047   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      13.697  -0.416   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.586  -1.952   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      15.012  -2.533   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      16.005  -1.356   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      14.028  -4.276   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      15.118  -5.363   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      12.689  -5.036   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      13.174  -6.498   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0      11.161  -5.227   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       9.676  -4.818   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.985  -6.194   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.448  -6.284   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.832  -7.481   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      11.370  -7.552   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      11.778  -9.037   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      10.492  -9.883   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.420 -11.422   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.053 -12.129   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.981 -13.668   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.614 -14.375   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       7.542 -15.914   0.000  0.00  0.00           C+0
HETATM   28  N   UNK     0       7.756 -11.298   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0       6.388 -12.006   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       7.827  -9.760   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       9.289  -8.922   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       8.461  -3.872   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       7.296  -4.879   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       7.700  -2.533   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       6.274  -1.952   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       6.385  -0.416   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       7.880  -0.047   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       8.693  -1.356   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0       8.865   1.695   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       7.774   2.783   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      10.204   2.456   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0       9.719   3.918   0.000  0.00  0.00           O+0
HETATM   43  O   UNK     0      11.732   2.646   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   43                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   10                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9    6                                                       
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17   32                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   31                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   31                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   28                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   24   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31   22   19                                                       
CONECT   32   16   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35   38                                                  
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38   39                                                  
CONECT   38   37   34                                                       
CONECT   39   37   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41    4                                                       
MASTER        0    0    0    0    0    0    0    0   43    0   92    0
END

View in JSmol

Synonyms

Value	Source
Pamamycin-607	MeSH

Chemical Formula

C₃₅H₆₁NO₇

Average Mass

607.8730 Da

Monoisotopic Mass

607.44480 Da

IUPAC Name

(1R,2S,5S,6R,7S,10R,11R,14S,16S)-5-[(1R)-1-[(2R,5S)-5-[(2R)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

Traditional Name

(1R,2S,5S,6R,7S,10R,11R,14S,16S)-5-[(1R)-1-[(2R,5S)-5-[(2R)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1^{7,10}]icosane-3,12-dione

CAS Registry Number

Not Available

SMILES

CCC[C@H](C[C@@H]1CC[C@@H](O1)[C@@H](C)[C@@H]1OC(=O)[C@@H](C)[C@H]2CC[C@@H](C[C@H](CCC)OC(=O)[C@H](C)[C@H]3CC[C@H](O3)[C@H]1C)O2)N(C)C

InChI Identifier

InChI=1S/C35H61NO7/c1-9-11-25(36(7)8)19-27-13-15-29(39-27)21(3)33-22(4)30-17-18-32(42-30)24(6)34(37)41-26(12-10-2)20-28-14-16-31(40-28)23(5)35(38)43-33/h21-33H,9-20H2,1-8H3/t21-,22-,23+,24-,25-,26+,27+,28+,29-,30+,31-,32-,33+/m1/s1

InChI Key

AHOIPAFUOXGGQB-IKNPUDIKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces alboniger	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolides and analogues

Sub Class

Not Available

Direct Parent

Macrolides and analogues

Alternative Parents

Substituents

Macrolide
Dicarboxylic acid or derivatives
Tetrahydrofuran
Amino acid or derivatives
Carboxylic acid ester
Lactone
Tertiary amine
Tertiary aliphatic amine
Carboxylic acid derivative
Dialkyl ether
Ether
Oxacycle
Organoheterocyclic compound
Organic oxide
Organic nitrogen compound
Organopnictogen compound
Amine
Organic oxygen compound
Hydrocarbon derivative
Organonitrogen compound
Organooxygen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.75	ALOGPS
logP	6.29	ChemAxon
logS	-6	ALOGPS
pKa (Strongest Basic)	10	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	83.53 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	167.1 m³·mol⁻¹	ChemAxon
Polarizability	70.19 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00016113

Chemspider ID

8275767

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10100233

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Germay O, Kumar N, Moore CG, Thomas EJ: Total syntheses of pamamycin 607 and methyl nonactate: stereoselective cyclisation of homoallylic alcohols that had been prepared with remote stereocontrol using allylstannanes. Org Biomol Chem. 2012 Dec 28;10(48):9709-33. doi: 10.1039/c2ob26801a. Epub 2012 Nov 15. [PubMed:23154487 ]
Lefevre P, Peirs P, Braibant M, Fauville-Dufaux M, Vanhoof R, Huygen K, Wang XM, Pogell B, Wang Y, Fischer P, Metz P, Content J: Antimycobacterial activity of synthetic pamamycins. J Antimicrob Chemother. 2004 Oct;54(4):824-7. doi: 10.1093/jac/dkh402. Epub 2004 Aug 18. [PubMed:15317744 ]
Hashimoto M, Katsura H, Kato R, Kawaide H, Natsume M: Effect of pamamycin-607 on secondary metabolite production by Streptomyces spp. Biosci Biotechnol Biochem. 2011;75(9):1722-6. doi: 10.1271/bbb.110251. Epub 2011 Sep 7. [PubMed:21897037 ]
Lanners S, Norouzi-Arasi H, Salom-Roig XJ, Hanquet G: A convergent strategy for the pamamycin macrodiolides: total synthesis of pamamycin-607, pamamycin-593, and pamamycin-621D precursors. Angew Chem Int Ed Engl. 2007;46(37):7086-9. doi: 10.1002/anie.200701749. [PubMed:17683030 ]
Hashimoto M, Komatsu H, Kozone I, Kawaide H, Abe H, Natsume M: Biosynthetic origin of the carbon skeleton and nitrogen atom of pamamycin-607, a nitrogen-containing polyketide. Biosci Biotechnol Biochem. 2005 Feb;69(2):315-20. doi: 10.1271/bbb.69.315. [PubMed:15725656 ]
LOTUS database [Link]

Showing NP-Card for (1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione (NP0162391)

MOL for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D MOL for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D SDF for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D-SDF for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

PDB for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D PDB for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

SMILES for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

INCHI for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

Structure for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)

3D Structure for NP0162391 ((1r,2s,5s,6r,7s,10r,11r,14s,16s)-5-[(1r)-1-[(2r,5s)-5-[(2r)-2-(dimethylamino)pentyl]oxolan-2-yl]ethyl]-2,6,11-trimethyl-14-propyl-4,13,19,20-tetraoxatricyclo[14.2.1.1⁷,¹⁰]icosane-3,12-dione)