Np mrd loader

Record Information
Version1.0
Created at2022-09-02 20:26:58 UTC
Updated at2022-09-02 20:26:58 UTC
NP-MRD IDNP0162113
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2s,5r,6r,9r,13s,16s,18r)-6-[(2r)-5,5-dimethyloxolan-2-yl]-5,16-dihydroxy-2,6,13,17,17-pentamethyl-7-oxapentacyclo[10.8.0.0²,⁹.0⁵,⁹.0¹³,¹⁸]icosa-1(20),11-dien-8-one
Description(2S,5R,6R,9R,13S,16S,18R)-6-[(2R)-5,5-dimethyloxolan-2-yl]-5,16-dihydroxy-2,6,13,17,17-pentamethyl-7-oxapentacyclo[10.8.0.0²,⁹.0⁵,⁹.0¹³,¹⁸]Icosa-1(20),11-dien-8-one belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (2s,5r,6r,9r,13s,16s,18r)-6-[(2r)-5,5-dimethyloxolan-2-yl]-5,16-dihydroxy-2,6,13,17,17-pentamethyl-7-oxapentacyclo[10.8.0.0²,⁹.0⁵,⁹.0¹³,¹⁸]icosa-1(20),11-dien-8-one is found in Holothuria poli. It was first documented in 2022 (PMID: 36055769). Based on a literature review a significant number of articles have been published on (2S,5R,6R,9R,13S,16S,18R)-6-[(2R)-5,5-dimethyloxolan-2-yl]-5,16-dihydroxy-2,6,13,17,17-pentamethyl-7-oxapentacyclo[10.8.0.0²,⁹.0⁵,⁹.0¹³,¹⁸]Icosa-1(20),11-dien-8-one (PMID: 36055768) (PMID: 36055767) (PMID: 36055766) (PMID: 36055765) (PMID: 36055763) (PMID: 36055764).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC30H44O5
Average Mass484.6770 Da
Monoisotopic Mass484.31887 Da
IUPAC Name(2S,5R,6R,9R,13S,16S,18R)-6-[(2R)-5,5-dimethyloxolan-2-yl]-5,16-dihydroxy-2,6,13,17,17-pentamethyl-7-oxapentacyclo[10.8.0.0^{2,9}.0^{5,9}.0^{13,18}]icosa-1(20),11-dien-8-one
Traditional Name(2S,5R,6R,9R,13S,16S,18R)-6-[(2R)-5,5-dimethyloxolan-2-yl]-5,16-dihydroxy-2,6,13,17,17-pentamethyl-7-oxapentacyclo[10.8.0.0^{2,9}.0^{5,9}.0^{13,18}]icosa-1(20),11-dien-8-one
CAS Registry NumberNot Available
SMILES
CC1(C)CC[C@@H](O1)[C@@]1(C)OC(=O)[C@]23CC=C4C(=CC[C@H]5C(C)(C)[C@@H](O)CC[C@]45C)[C@]2(C)CC[C@]13O
InChI Identifier
InChI=1S/C30H44O5/c1-24(2)13-12-22(34-24)28(7)30(33)17-16-27(6)19-8-9-20-25(3,4)21(31)11-14-26(20,5)18(19)10-15-29(27,30)23(32)35-28/h8,10,20-22,31,33H,9,11-17H2,1-7H3/t20-,21-,22+,26+,27-,28+,29+,30-/m0/s1
InChI KeyJFAWPWREDBAIMY-BBDIDADBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Holothuria poliiLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentTriterpenoids
Alternative Parents
Substituents
  • Triterpenoid
  • Steroid lactone
  • 3-hydroxysteroid
  • Hydroxysteroid
  • 17-hydroxysteroid
  • 3-beta-hydroxysteroid
  • Steroid
  • Gamma butyrolactone
  • Cyclic alcohol
  • Tertiary alcohol
  • Tetrahydrofuran
  • Secondary alcohol
  • Lactone
  • Carboxylic acid ester
  • Oxacycle
  • Monocarboxylic acid or derivatives
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organoheterocyclic compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP5.12ALOGPS
logP3.98ChemAxon
logS-5.3ALOGPS
pKa (Strongest Acidic)12.96ChemAxon
pKa (Strongest Basic)-0.78ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area75.99 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity135.7 m³·mol⁻¹ChemAxon
Polarizability55.73 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound163007659
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Pays E, Radwanska M, Magez S: The Pathogenesis of African Trypanosomiasis. Annu Rev Pathol. 2022 Sep 2. doi: 10.1146/annurev-pathmechdis-031621-025153. [PubMed:36055769 ]
  2. Khan K, Van Aken O: The colonisation of land was a likely driving force for the evolution of mitochondrial retrograde signalling in plants. J Exp Bot. 2022 Sep 3. pii: 6687801. doi: 10.1093/jxb/erac351. [PubMed:36055768 ]
  3. Authors unspecified: Erratum. Br J Dermatol. 2022 Sep;187(3):451. doi: 10.1111/bjd.21748. [PubMed:36055767 ]
  4. Authors unspecified: BAD and BPG guidelines for narrowband ultraviolet B phototherapy 2022. Br J Dermatol. 2022 Sep;187(3):vi. doi: 10.1111/bjd.21734. [PubMed:36055766 ]
  5. Sprecher E: What do rare and common have in common? Br J Dermatol. 2022 Sep;187(3):279-280. doi: 10.1111/bjd.21632. [PubMed:36055765 ]
  6. Dias BGC, Santos FAP, Meschiatti M, Brixner BM, Almeida AA, Queiroz O, Cappellozza BI: Effects of feeding different probiotic types on metabolic, performance, and carcass responses of Bos indicus feedlot cattle offered a high-concentrate diet. J Anim Sci. 2022 Oct 1;100(10). pii: 6687795. doi: 10.1093/jas/skac289. [PubMed:36055763 ]
  7. Authors unspecified: Revolutionizing Atopic Dermatitis, 9-11 April 2022. Br J Dermatol. 2022 Sep;187(3):e80-e155. doi: 10.1111/bjd.21666. [PubMed:36055764 ]
  8. Wang B, Lv R, Zhang Z, Yang C, Xun H, Liu B, Gong L: Homoeologous exchange enables rapid evolution of tolerance to salinity and hyper-osmotic stresses in a synthetic allotetraploid wheat. J Exp Bot. 2022 Dec 8;73(22):7488-7502. doi: 10.1093/jxb/erac355. [PubMed:36055762 ]
  9. Horwitz JK, Kaldas FM: CAQ Corner: Technical considerations in liver transplantation (101 for hepatologists). Liver Transpl. 2023 Feb 1;29(2):217-225. doi: 10.1002/lt.26556. Epub 2023 Jan 17. [PubMed:36055761 ]
  10. Wang P, Mou P, Hu L, Hu S: Effects of nutrient heterogeneity on root foraging and plant growth at the individual and community level. J Exp Bot. 2022 Dec 8;73(22):7503-7515. doi: 10.1093/jxb/erac358. [PubMed:36055760 ]
  11. LOTUS database [Link]