NP-MRD: Showing NP-Card for methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate (NP0160444)

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Record Information

Version

2.0

Created at

2022-09-02 18:24:02 UTC

Updated at

2022-09-02 18:24:02 UTC

NP-MRD ID

NP0160444

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate

Description

methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate is found in Lonicera japonica.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022220242D          

 32 34  0  0  1  0            999 V2000
   -1.3222   -4.1866    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078   -3.7741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078   -2.9491    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3222   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0367   -2.9491    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4656   -2.9491    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1801   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8946   -2.9491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6091   -2.5366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1801   -1.7116    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8946   -1.2991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4656   -1.2991    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4656   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512   -1.7116    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0367   -1.2991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222   -1.7116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1067   -1.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5356   -1.7116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5356   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1067   -2.5366    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8212   -2.9491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212   -3.7741    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4886   -4.2590    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2337   -5.0437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7186   -5.7111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4087   -5.0437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0762   -5.7111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1537   -4.2590    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
  6 15  1  0  0  0  0
 15 16  1  1  0  0  0
  4 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 19 24  1  0  0  0  0
  3 24  1  0  0  0  0
 24 25  1  1  0  0  0
 26 25  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 26 32  1  0  0  0  0
M  END

     RDKit          3D

 64 66  0  0  0  0  0  0  0  0999 V2000
   -1.3034    0.9850    3.0023 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4847    0.9009    1.9786 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0429   -0.4465    1.5762 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5692   -0.8408    0.2791 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9564   -0.9939    0.5448 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7385   -0.1393   -0.1830 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4831    0.7023    0.6122 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6040    1.2129   -0.0324 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.1792    2.3714    0.7273 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2999    2.8644    0.0617 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6846    0.1694   -0.1966 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.4455    0.5269   -1.3118 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0258   -1.1395   -0.5052 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9524   -1.9216    0.6304 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6480   -0.9138   -1.1192 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7407   -0.3265   -2.3690 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0315   -2.0591   -0.1625 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2869   -2.3857    0.1417 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0369   -1.6922    0.9693 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4040   -2.1492    1.1967 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1193   -1.4877    1.9876 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9327   -3.2716    0.5792 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2727   -3.6120    0.8823 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5383   -0.4953    1.6537 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2498    0.7665    1.3015 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2397    1.1970   -0.1131 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0416    2.3436   -0.1901 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1392    2.0408   -0.9827 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2111    1.3643   -0.1855 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5117    1.0056   -1.9272 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.5364    0.2018   -2.6498 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8174    0.2500   -0.9563 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6929    1.9520    3.3049 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5852    0.1012    3.5364 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1654    1.7512    1.4038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3261   -1.2187    2.3233 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5219   -0.0414   -0.4673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1228    0.5244   -0.8558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3527    1.5896   -1.0576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5265    2.0039    1.7149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4510    3.2046    0.8534 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0674    3.4234   -0.7225 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3122    0.1333    0.7196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4068    0.5816   -1.1220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6067   -1.6976   -1.2646 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3644   -1.5026    1.2928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2257   -1.9354   -1.2800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5396   -0.7013   -2.8094 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7359   -3.2671   -0.3280 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9983   -2.8706    0.4957 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3731   -3.6088    1.9985 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5208   -4.6489    0.5627 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7442   -0.6010    2.7792 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8320    1.5627    1.9845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3059    0.6640    1.6260 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2775    1.4808   -0.5427 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5046    2.9139   -1.5546 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0611    0.2679   -0.1042 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2759    1.7879    0.8449 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2259    1.4953   -0.6271 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7920    1.5298   -2.5631 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3309    0.3067   -3.7538 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5263   -0.8671   -2.3636 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5291    0.6583   -2.4931 H   0  0  0  0  0  0  0  0  0  0  0  0
 23 22  1  0
 22 20  1  0
 20 21  2  0
 20 19  1  0
 19 18  2  0
 18 17  1  0
 17  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  8 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 13 15  1  0
 15 16  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
  3 24  1  0
 24 25  1  0
 25 26  1  0
 26 32  1  0
 32 30  1  0
 30 31  1  0
 30 28  1  0
 28 29  1  0
 28 27  1  0
 24 19  1  0
 27 26  1  0
 15  6  1  0
 23 50  1  0
 23 51  1  0
 23 52  1  0
 18 49  1  0
  4 37  1  6
  6 38  1  6
  8 39  1  6
  9 40  1  0
  9 41  1  0
 10 42  1  0
 11 43  1  1
 12 44  1  0
 13 45  1  6
 14 46  1  0
 15 47  1  6
 16 48  1  0
  3 36  1  1
  2 35  1  0
  1 33  1  0
  1 34  1  0
 24 53  1  1
 25 54  1  0
 25 55  1  0
 26 56  1  6
 30 61  1  6
 31 62  1  0
 31 63  1  0
 31 64  1  0
 28 57  1  6
 29 58  1  0
 29 59  1  0
 29 60  1  0
M  END


  Mrv1652309022220242D          

 32 34  0  0  1  0            999 V2000
   -1.3222   -4.1866    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078   -3.7741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078   -2.9491    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3222   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0367   -2.9491    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4656   -2.9491    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1801   -2.5366    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.8946   -2.9491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6091   -2.5366    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1801   -1.7116    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.8946   -1.2991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4656   -1.2991    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4656   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7512   -1.7116    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.0367   -1.2991    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3222   -1.7116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6078   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1067   -1.7116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212   -1.2991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5356   -1.7116    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212   -0.4741    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5356   -0.0616    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1067   -2.5366    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8212   -2.9491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8212   -3.7741    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4886   -4.2590    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2337   -5.0437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7186   -5.7111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4087   -5.0437    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0762   -5.7111    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1537   -4.2590    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  6  0  0  0
 13 15  1  0  0  0  0
  6 15  1  0  0  0  0
 15 16  1  1  0  0  0
  4 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 19 24  1  0  0  0  0
  3 24  1  0  0  0  0
 24 25  1  1  0  0  0
 26 25  1  1  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  1  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 26 32  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0160444

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=CO[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](C=C)[C@@H]1C[C@@H]1O[C@H](C)[C@H](C)O1

> <INCHI_IDENTIFIER>
InChI=1S/C21H32O11/c1-5-11-12(6-15-29-9(2)10(3)30-15)13(19(26)27-4)8-28-20(11)32-21-18(25)17(24)16(23)14(7-22)31-21/h5,8-12,14-18,20-25H,1,6-7H2,2-4H3/t9-,10+,11-,12+,14-,15-,16-,17+,18-,20+,21+/m1/s1

> <INCHI_KEY>
FYLXQAYYBFZLSK-LXSUFIHRSA-N

> <FORMULA>
C21H32O11

> <MOLECULAR_WEIGHT>
460.476

> <EXACT_MASS>
460.19446185

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
46.55890203055141

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (2S,3R,4S)-4-{[(2R,4R,5S)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-3-ethenyl-2-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-5-carboxylate

> <ALOGPS_LOGP>
-0.30

> <JCHEM_LOGP>
-0.29281909333333267

> <ALOGPS_LOGS>
-1.80

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.198719032298822

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.207016193590846

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810847615592513

> <JCHEM_POLAR_SURFACE_AREA>
153.36999999999998

> <JCHEM_REFRACTIVITY>
107.22059999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.37e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (4S,5R,6S)-4-{[(2R,4R,5S)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4H-pyran-3-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.468  -7.815   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.134  -7.045   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.134  -5.505   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.468  -4.735   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -3.802  -5.505   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -5.136  -4.735   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -6.469  -5.505   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -7.803  -4.735   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -9.137  -5.505   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0     -10.470  -4.735   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -7.803  -3.195   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -9.137  -2.425   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -6.469  -2.425   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -6.469  -0.885   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -5.136  -3.195   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -3.802  -2.425   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      -2.468  -3.195   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -1.134  -2.425   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.199  -3.195   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.533  -2.425   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       2.867  -3.195   0.000  0.00  0.00           O+0
HETATM   22  O   UNK     0       1.533  -0.885   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       2.867  -0.115   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       0.199  -4.735   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       1.533  -5.505   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.533  -7.045   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       2.779  -7.950   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.303  -9.415   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.208 -10.661   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.763  -9.415   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -0.142 -10.661   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       0.287  -7.950   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   24                                                  
CONECT    4    3    5   17                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   15                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13    6   16                                                  
CONECT   16   15                                                            
CONECT   17    4   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   24                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22                                                            
CONECT   24   19    3   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   32                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   26                                                       
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₃₂O₁₁

Average Mass

460.4760 Da

Monoisotopic Mass

460.19446 Da

IUPAC Name

methyl (2S,3R,4S)-4-{[(2R,4R,5S)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-3-ethenyl-2-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,4-dihydro-2H-pyran-5-carboxylate

Traditional Name

methyl (4S,5R,6S)-4-{[(2R,4R,5S)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4H-pyran-3-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=CO[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](C=C)[C@@H]1C[C@@H]1O[C@H](C)[C@H](C)O1

InChI Identifier

InChI=1S/C21H32O11/c1-5-11-12(6-15-29-9(2)10(3)30-15)13(19(26)27-4)8-28-20(11)32-21-18(25)17(24)16(23)14(7-22)31-21/h5,8-12,14-18,20-25H,1,6-7H2,2-4H3/t9-,10+,11-,12+,14-,15-,16-,17+,18-,20+,21+/m1/s1

InChI Key

FYLXQAYYBFZLSK-LXSUFIHRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lonicera japonica	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.3	ALOGPS
logP	-0.29	ChemAxon
logS	-1.8	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	153.37 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	107.22 m³·mol⁻¹	ChemAxon
Polarizability	46.56 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate (NP0160444)

MOL for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

3D MOL for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

3D SDF for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

3D-SDF for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

PDB for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

3D PDB for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

SMILES for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

INCHI for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

Structure for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)

3D Structure for NP0160444 (methyl (4s,5r,6s)-4-{[(2r,4r,5s)-4,5-dimethyl-1,3-dioxolan-2-yl]methyl}-5-ethenyl-6-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5,6-dihydro-4h-pyran-3-carboxylate)