NP-MRD: Showing NP-Card for (1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol (NP0160123)

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Record Information

Version

2.0

Created at

2022-09-02 18:00:27 UTC

Updated at

2022-09-02 18:00:27 UTC

NP-MRD ID

NP0160123

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol

Description

Rubescensin I belongs to the class of organic compounds known as hydroxysteroids. Hydroxysteroids are compounds containing an steroid backbone, with at least one hydrogen substituted by a hydroxyl group. (1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol is found in Isodon rubescens. Based on a literature review very few articles have been published on Rubescensin I.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022220002D          

 24 26  0  0  1  0            999 V2000
    5.2520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9355    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3977    1.5642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2732    1.9515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4553    2.3388    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  2  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 12 11  1  1  0  0  0
 12 13  1  0  0  0  0
  8 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  6  0  0  0
 21 22  1  0  0  0  0
  9 23  1  0  0  0  0
  5 23  1  0  0  0  0
 23 24  1  6  0  0  0
M  END

     RDKit          3D

 56 58  0  0  0  0  0  0  0  0999 V2000
    5.2643   -0.0729   -1.6655 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6850   -0.1409   -0.4721 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5442    0.1700    0.7010 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0706    1.2462    1.4321 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2707   -0.5171   -0.2994 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6282   -1.0108   -1.6026 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2520   -1.5287   -1.1431 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4010   -0.3448   -0.8995 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.0403    0.6015    0.0290 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3295    1.5634    0.6229 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1145    1.7200    0.3765 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7679    0.5718   -0.3221 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9550   -0.6865   -0.3109 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.8194   -1.3153    1.0318 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6590   -1.6714   -1.2226 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0549   -1.9423   -0.7860 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8901   -0.7602   -0.5081 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.9273   -1.1547    0.3636 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1873    0.4068    0.1292 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.3754    0.3318    1.6132 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9375    1.6496   -0.3475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4694    2.8167    0.2341 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4739    0.5555    0.3400 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0027    1.7979   -0.0542 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.2949    0.1999   -1.8102 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6692   -0.3036   -2.5353 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6110    0.2709    0.4332 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4979   -0.7455    1.3540 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6043    2.0627    1.2842 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2390   -1.4164    0.3827 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2302   -1.8015   -2.0486 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4273   -0.1534   -2.2583 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8523   -2.2235   -1.9107 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4835   -2.1495   -0.2587 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2095    0.1278   -1.8966 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8286    2.2323    1.2927 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6001    1.9969    1.3528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1993    2.6737   -0.2300 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8358    0.8701   -1.4145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1512   -2.1965    0.9371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3550   -0.6601    1.7947 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7943   -1.7453    1.3685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6151   -1.3258   -2.2910 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0780   -2.6194   -1.1634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0533   -2.6753    0.0654 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5501   -2.5194   -1.6240 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4115   -0.4425   -1.4436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6821   -0.5197    0.3119 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9047   -0.6230    1.9052 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4733    0.3842    2.2187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0606    1.1356    2.0098 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0466    1.5245   -0.1818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8336    1.7746   -1.4556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4369    3.5667   -0.4105 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5781    0.5226    1.4547 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7509    2.4923    0.6054 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 20  1  1
 19 21  1  0
 21 22  1  0
 19 17  1  0
 17 18  1  0
 17 16  1  0
 16 15  1  0
 15 13  1  0
 13 14  1  1
 13  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5 23  1  0
 23 24  1  0
 23  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  1  0
  5  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  1  0
 12 19  1  0
 12 13  1  0
  9  8  1  0
 20 49  1  0
 20 50  1  0
 20 51  1  0
 21 52  1  0
 21 53  1  0
 22 54  1  0
 17 47  1  6
 18 48  1  0
 16 45  1  0
 16 46  1  0
 15 43  1  0
 15 44  1  0
 14 40  1  0
 14 41  1  0
 14 42  1  0
  8 35  1  6
  7 33  1  0
  7 34  1  0
  6 31  1  0
  6 32  1  0
  5 30  1  1
 23 55  1  1
 24 56  1  0
 10 36  1  0
 11 37  1  0
 11 38  1  0
 12 39  1  6
  1 25  1  0
  1 26  1  0
  3 27  1  0
  3 28  1  0
  4 29  1  0
M  END


  Mrv1652309022220002D          

 24 26  0  0  1  0            999 V2000
    5.2520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8395   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7770   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7770    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3645    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5395    1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5395    0.4125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9520   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1270   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020   -0.3020    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1105    0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9355    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3020    1.1270    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3977    1.5642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2732    1.9515    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4553    2.3388    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6020    1.1270    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0145    1.8414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  2  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 12 11  1  1  0  0  0
 12 13  1  0  0  0  0
  8 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  1  0  0  0
 19 21  1  6  0  0  0
 21 22  1  0  0  0  0
  9 23  1  0  0  0  0
  5 23  1  0  0  0  0
 23 24  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0160123

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]1(CO)[C@H](O)CC[C@@]2(C)[C@@H]3CC[C@H]([C@@H](O)C3=CC[C@H]12)C(=C)CO

> <INCHI_IDENTIFIER>
InChI=1S/C20H32O4/c1-12(10-21)13-4-6-15-14(18(13)24)5-7-16-19(15,2)9-8-17(23)20(16,3)11-22/h5,13,15-18,21-24H,1,4,6-11H2,2-3H3/t13-,15+,16-,17+,18+,19-,20+/m0/s1

> <INCHI_KEY>
OCSPOCDQHVVGDZ-UFANPLCHSA-N

> <FORMULA>
C20H32O4

> <MOLECULAR_WEIGHT>
336.472

> <EXACT_MASS>
336.23005951

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
56

> <JCHEM_AVERAGE_POLARIZABILITY>
38.5888764333895

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2S,4aS,4bS,7R,8S,8aS)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,4b,5,6,7,8,8a,9-dodecahydrophenanthrene-1,7-diol

> <ALOGPS_LOGP>
1.73

> <JCHEM_LOGP>
0.8735954143333343

> <ALOGPS_LOGS>
-2.82

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.570952566401012

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.036595647538523

> <JCHEM_PKA_STRONGEST_BASIC>
-2.727994764707569

> <JCHEM_POLAR_SURFACE_AREA>
80.92

> <JCHEM_REFRACTIVITY>
94.92789999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.15e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,4aS,4bS,7R,8S,8aS)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       9.804   2.104   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.034   0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.804  -0.564   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       9.034  -1.897   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       7.494   0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.724  -0.564   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.184  -0.564   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.414   0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.184   2.104   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.414   3.437   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.874   3.437   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.104   2.104   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.874   0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.644  -0.564   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.104  -0.564   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.564  -0.564   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.206   0.770   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -1.746   0.770   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       0.564   2.104   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.742   2.920   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       0.510   3.643   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -0.850   4.366   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.724   2.104   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.494   3.437   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    5                                                  
CONECT    3    2    4                                                       
CONECT    4    3                                                            
CONECT    5    2    6   23                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10   23                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   19                                                  
CONECT   13   12    8   14   15                                             
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   12   20   21                                             
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21                                                            
CONECT   23    9    5   24                                                  
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   52    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂O₄

Average Mass

336.4720 Da

Monoisotopic Mass

336.23006 Da

IUPAC Name

(1R,2S,4aS,4bS,7R,8S,8aS)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,4b,5,6,7,8,8a,9-dodecahydrophenanthrene-1,7-diol

Traditional Name

(1R,2S,4aS,4bS,7R,8S,8aS)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol

CAS Registry Number

Not Available

SMILES

C[C@]1(CO)[C@H](O)CC[C@@]2(C)[C@@H]3CC[C@H]([C@@H](O)C3=CC[C@H]12)C(=C)CO

InChI Identifier

InChI=1S/C20H32O4/c1-12(10-21)13-4-6-15-14(18(13)24)5-7-16-19(15,2)9-8-17(23)20(16,3)11-22/h5,13,15-18,21-24H,1,4,6-11H2,2-3H3/t13-,15+,16-,17+,18+,19-,20+/m0/s1

InChI Key

OCSPOCDQHVVGDZ-UFANPLCHSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Isodon rubescens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hydroxysteroids. Hydroxysteroids are compounds containing an steroid backbone, with at least one hydrogen substituted by a hydroxyl group.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Hydroxysteroids

Direct Parent

Hydroxysteroids

Alternative Parents

Substituents

Diterpenoid
Abietane diterpenoid
Hydroxysteroid
4-hydroxysteroid
Phenanthrene
Hydrophenanthrene
Cyclic alcohol
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.73	ALOGPS
logP	0.87	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	14.04	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	80.92 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	94.93 m³·mol⁻¹	ChemAxon
Polarizability	38.59 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00031229

Chemspider ID

9419645

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11244609

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol (NP0160123)

MOL for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

3D MOL for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

3D SDF for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

3D-SDF for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

PDB for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

3D PDB for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

SMILES for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

INCHI for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

Structure for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)

3D Structure for NP0160123 ((1r,2s,4as,4bs,7r,8s,8as)-8-(hydroxymethyl)-2-(3-hydroxyprop-1-en-2-yl)-4b,8-dimethyl-1,2,3,4,4a,5,6,7,8a,9-decahydrophenanthrene-1,7-diol)