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Showing NP-Card for 2-oxabicyclo[3.1.0]hexa-1(5),3-diene (NP0158975)

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Record Information
Version1.0
Created at2022-09-02 16:39:12 UTC
Updated at2022-09-02 16:39:12 UTC
NP-MRD IDNP0158975
Secondary Accession NumbersNone
Natural Product Identification
Common Name2-oxabicyclo[3.1.0]hexa-1(5),3-diene
Description2-Oxabicyclo[3.1.0]Hexa-1(5),3-diene belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom. 2-oxabicyclo[3.1.0]hexa-1(5),3-diene is found in Methanothermobacter thermautotrophicus. Based on a literature review very few articles have been published on 2-oxabicyclo[3.1.0]Hexa-1(5),3-diene.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)


  Mrv1652309022218392D          

  6  7  0  0  0  0            999 V2000
    1.8264    1.1790    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3415    0.5115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569    0.7665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569    1.5915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3415    1.8464    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1576    1.1790    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  0  0  0  0
  3  6  1  0  0  0  0
M  END
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3D MOL for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)

     RDKit          3D

 10 11  0  0  0  0  0  0  0  0999 V2000
   -1.5506   -0.4686   -0.1969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9932    0.7441    0.1149 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3618    0.5546    0.1561 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5586   -0.7831   -0.1373 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6020   -1.3519   -0.3396 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7573    0.0447    0.1266 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6068   -0.6479   -0.3038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5510    1.6499    0.2871 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3018   -0.0646    1.0784 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3242    0.3227   -0.7856 H   0  0  0  0  0  0  0  0  0  0  0  0
  6  4  1  0
  4  3  2  0
  3  2  1  0
  2  1  2  0
  1  5  1  0
  3  6  1  0
  5  4  1  0
  6  9  1  0
  6 10  1  0
  2  8  1  0
  1  7  1  0
M  END
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3D SDF for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)


  Mrv1652309022218392D          

  6  7  0  0  0  0            999 V2000
    1.8264    1.1790    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3415    0.5115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569    0.7665    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5569    1.5915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3415    1.8464    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1576    1.1790    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  1  5  1  0  0  0  0
  4  6  1  0  0  0  0
  3  6  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0158975

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C1C2=C1C=CO2

> <INCHI_IDENTIFIER>
InChI=1S/C5H4O/c1-2-6-5-3-4(1)5/h1-2H,3H2

> <INCHI_KEY>
RGJOCWAYOLIQRR-UHFFFAOYSA-N

> <FORMULA>
C5H4O

> <MOLECULAR_WEIGHT>
80.086

> <EXACT_MASS>
80.026214749

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
10

> <JCHEM_AVERAGE_POLARIZABILITY>
7.810884649237751

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-oxabicyclo[3.1.0]hexa-1(5),3-diene

> <ALOGPS_LOGP>
0.96

> <JCHEM_LOGP>
0.9961332109999999

> <ALOGPS_LOGS>
-0.71

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8146675997664192

> <JCHEM_POLAR_SURFACE_AREA>
13.14

> <JCHEM_REFRACTIVITY>
22.2821

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.55e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-oxabicyclo[3.1.0]hexa-1(5),3-diene

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)

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PDB for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)
HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       3.409   2.201   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.504   0.955   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.039   1.431   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.039   2.971   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       2.504   3.447   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -0.294   2.201   0.000  0.00  0.00           C+0
CONECT    1    2    5                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    6                                                  
CONECT    4    3    5    6                                                  
CONECT    5    4    1                                                       
CONECT    6    4    3                                                       
MASTER        0    0    0    0    0    0    0    0    6    0   14    0
END

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3D PDB for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)
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SMILES for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)
C1C2=C1C=CO2
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INCHI for NP0158975 (2-oxabicyclo[3.1.0]hexa-1(5),3-diene)
InChI=1S/C5H4O/c1-2-6-5-3-4(1)5/h1-2H,3H2
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View in JSmol
SynonymsNot Available
Chemical FormulaC5H4O
Average Mass80.0860 Da
Monoisotopic Mass80.02621 Da
IUPAC Name2-oxabicyclo[3.1.0]hexa-1(5),3-diene
Traditional Name2-oxabicyclo[3.1.0]hexa-1(5),3-diene
CAS Registry NumberNot Available
SMILES
C1C2=C1C=CO2
InChI Identifier
InChI=1S/C5H4O/c1-2-6-5-3-4(1)5/h1-2H,3H2
InChI KeyRGJOCWAYOLIQRR-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Methanothermobacter thermautotrophicusLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as heteroaromatic compounds. Heteroaromatic compounds are compounds containing an aromatic ring where a carbon atom is linked to an hetero atom.
KingdomOrganic compounds  
Super ClassOrganoheterocyclic compounds  
ClassHeteroaromatic compounds  
Sub ClassNot Available
Direct ParentHeteroaromatic compounds  
Alternative Parents
Substituents
  • Heteroaromatic compound
    • 

  • Furan
    • 

  • Oxacycle
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP0.96ALOGPS
logP1ChemAxon
logS-0.71ALOGPS
pKa (Strongest Basic)-2.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area13.14 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity22.28 m³·mol⁻¹ChemAxon
Polarizability7.81 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID29318417  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound23332032  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]