NP-MRD: Showing NP-Card for methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate (NP0158906)

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Record Information

Version

2.0

Created at

2022-09-02 16:34:18 UTC

Updated at

2022-09-02 16:34:19 UTC

NP-MRD ID

NP0158906

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate

Description

CORONARIDINE HYDROXYINDOLENINE belongs to the class of organic compounds known as ibogan-type alkaloids. These are indole alkaloids with a structure based on the ibogamine skeleton or a derivative thereof. Ibogamine is a pentacyclic heterocyclic compound consisting of an indole fused to an azepane-containing tricyclic moiety ring. Iboga alkaloids arise from the cyclization of a secodine-type precursor through the formation of a 16,21 bond. methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate is found in Tabernaemontana divaricata and Tabernaemontana bufalina. methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate was first documented in 2007 (PMID: 17879729). Based on a literature review a small amount of articles have been published on CORONARIDINE HYDROXYINDOLENINE (PMID: 26231157) (PMID: 19647051) (PMID: 24748755).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022218342D          

 26 30  0  0  1  0            999 V2000
    1.2601   -1.4409    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5419   -1.0349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5345   -0.2099    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0280    0.4083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5691    1.0129    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4777    1.8435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1999    1.4192    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8961    1.9651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7346    1.8609    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0970    1.0939    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5605    1.7764    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7926    0.3271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4277   -0.1994    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1247    0.2420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9191    0.0194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5091    0.5961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3047    1.3954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5103    1.6180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9203    1.0413    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9372    0.1895    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8834   -0.6338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1436   -0.9988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5695   -1.0919    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5158   -1.9152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4840    0.8778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1031    0.4383    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 10 19  1  0  0  0  0
 12 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 20 25  1  0  0  0  0
  5 25  1  0  0  0  0
 20 26  1  0  0  0  0
  3 26  1  0  0  0  0
 26  7  1  6  0  0  0
M  END

     RDKit          2D

 52 56  0  0  0  0  0  0  0  0999 V2000
   -1.9516   -6.1994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5346   -5.7076    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8825   -5.2157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3823   -5.2381    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1517   -3.9504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8796   -4.7453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3344   -4.1069    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4186   -3.0703    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2841   -1.5763    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0323   -0.7500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3532   -0.0392    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3943   -1.2135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2760    0.0000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.3943    1.2135    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7062    2.6807    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4086    3.6844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8351    3.2209    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1470    1.7537    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0323    0.7500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9214   -2.6179    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7848   -1.3913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6347   -0.6084    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2787   -1.5258    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1422   -0.2992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4212   -2.6403    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1520   -3.9056    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3687   -6.6913    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4597   -7.6165    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6126   -4.8529    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3547   -4.4516    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0427   -7.1246    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9385   -6.7146    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0998   -6.7113    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8387   -5.5973    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6515   -3.9729    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7399   -5.9740    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8188   -5.8058    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3392   -4.2546    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8911   -2.7841    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7840   -1.5950    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1354   -0.3413    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6292   -0.8277    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1328    3.1443    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0967    5.1517    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9499    4.2246    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5736    1.2902    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0056    0.9274    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3688   -1.1626    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9156    0.5642    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9152   -2.5059    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5483   -1.1457    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8236   -5.0449    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  6
 10 19  1  0
 19 18  2  0
 18 17  1  0
 17 16  2  0
 16 15  1  0
 15 14  2  0
 14 13  1  0
 13 12  2  0
 12 20  1  0
 20 25  1  0
 20 26  1  0
 20 21  1  1
 21 22  2  0
 21 23  1  0
 23 24  1  0
 26  3  1  0
 25  5  1  0
 26  7  1  0
 12 10  1  0
 14 19  1  0
  1 27  1  0
  1 28  1  0
  1 29  1  0
  2 30  1  0
  2 31  1  0
  3 32  1  1
  4 33  1  0
  4 34  1  0
  5 35  1  1
  6 36  1  0
  6 37  1  0
  8 38  1  0
  8 39  1  0
  9 40  1  0
  9 41  1  0
 11 42  1  0
 18 46  1  0
 17 45  1  0
 16 44  1  0
 15 43  1  0
 25 50  1  0
 25 51  1  0
 26 52  1  1
 24 47  1  0
 24 48  1  0
 24 49  1  0
M  END


  Mrv1652309022218342D          

 26 30  0  0  1  0            999 V2000
    1.2601   -1.4409    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5419   -1.0349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5345   -0.2099    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.0280    0.4083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5691    1.0129    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4777    1.8435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1999    1.4192    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8961    1.9651    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7346    1.8609    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0970    1.0939    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5605    1.7764    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7926    0.3271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4277   -0.1994    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.1247    0.2420    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9191    0.0194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5091    0.5961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3047    1.3954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5103    1.6180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9203    1.0413    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9372    0.1895    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8834   -0.6338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1436   -0.9988    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5695   -1.0919    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5158   -1.9152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4840    0.8778    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1031    0.4383    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 14 19  1  0  0  0  0
 10 19  1  0  0  0  0
 12 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 20 25  1  0  0  0  0
  5 25  1  0  0  0  0
 20 26  1  0  0  0  0
  3 26  1  0  0  0  0
 26  7  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0158906

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC[C@H]1C[C@@H]2CN3CC[C@@]4(O)C5=CC=CC=C5N=C4[C@](C2)([C@H]13)C(=O)OC

> <INCHI_IDENTIFIER>
InChI=1S/C21H26N2O3/c1-3-14-10-13-11-20(19(24)26-2)17(14)23(12-13)9-8-21(25)15-6-4-5-7-16(15)22-18(20)21/h4-7,13-14,17,25H,3,8-12H2,1-2H3/t13-,14-,17-,20-,21+/m0/s1

> <INCHI_KEY>
PEBWIYPIKTWOBT-XPZFDQFCSA-N

> <FORMULA>
C21H26N2O3

> <MOLECULAR_WEIGHT>
354.45

> <EXACT_MASS>
354.194342705

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
39.256325044840914

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1S,10R,15S,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0^{2,10}.0^{4,9}.0^{13,18}]nonadeca-2,4,6,8-tetraene-1-carboxylate

> <ALOGPS_LOGP>
2.38

> <JCHEM_LOGP>
3.1198180579999994

> <ALOGPS_LOGS>
-3.42

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.683638414770886

> <JCHEM_PKA_STRONGEST_BASIC>
8.975470487932968

> <JCHEM_POLAR_SURFACE_AREA>
62.129999999999995

> <JCHEM_REFRACTIVITY>
100.44699999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.34e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1S,10R,15S,17S,18S)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0^{2,10}.0^{4,9}.0^{13,18}]nonadeca-2,4,6,8-tetraene-1-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       2.352  -2.690   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.012  -1.932   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.998  -0.392   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.052   0.762   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.062   1.891   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.892   3.441   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       2.240   2.649   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       3.539   3.668   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.105   3.474   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.781   2.042   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       6.646   3.316   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.213   0.611   0.000  0.00  0.00           C+0
HETATM   13  N   UNK     0       6.398  -0.372   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0       7.699   0.452   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.182   0.036   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.284   1.113   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.902   2.605   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       8.419   3.020   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.318   1.944   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.616   0.354   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.516  -1.183   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       2.135  -1.864   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0       4.796  -2.038   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       4.696  -3.575   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.770   1.639   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.059   0.818   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   26                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   25                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   26                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   19                                             
CONECT   11   10                                                            
CONECT   12   10   13   20                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   14   10                                                  
CONECT   20   12   21   25   26                                             
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23                                                            
CONECT   25   20    5                                                       
CONECT   26   20    3    7                                                  
MASTER        0    0    0    0    0    0    0    0   26    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₆N₂O₃

Average Mass

354.4500 Da

Monoisotopic Mass

354.19434 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC[C@H]1C[C@@H]2CN3CC[C@@]4(O)C5=CC=CC=C5N=C4[C@](C2)([C@H]13)C(=O)OC

InChI Identifier

InChI=1S/C21H26N2O3/c1-3-14-10-13-11-20(19(24)26-2)17(14)23(12-13)9-8-21(25)15-6-4-5-7-16(15)22-18(20)21/h4-7,13-14,17,25H,3,8-12H2,1-2H3/t13-,14-,17-,20-,21+/m0/s1

InChI Key

PEBWIYPIKTWOBT-XPZFDQFCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ervatamia coronaria	LOTUS Database	35616633
Ervatamia hainanensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ibogan-type alkaloids. These are indole alkaloids with a structure based on the ibogamine skeleton or a derivative thereof. Ibogamine is a pentacyclic heterocyclic compound consisting of an indole fused to an azepane-containing tricyclic moiety ring. Iboga alkaloids arise from the cyclization of a secodine-type precursor through the formation of a 16,21 bond.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Ibogan-type alkaloids

Sub Class

Not Available

Direct Parent

Ibogan-type alkaloids

Alternative Parents

Substituents

Ibogan skeleton
Catharanthine skeleton
3-alkylindole
Indole or derivatives
Piperidinecarboxylic acid
Aralkylamine
Azepane
Piperidine
Benzenoid
Tertiary alcohol
Methyl ester
Amino acid or derivatives
Carboxylic acid ester
Ketimine
Tertiary amine
Tertiary aliphatic amine
Organoheterocyclic compound
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Azacycle
Organic oxide
Imine
Organic oxygen compound
Organic nitrogen compound
Alcohol
Hydrocarbon derivative
Carbonyl group
Organonitrogen compound
Organooxygen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.38	ALOGPS
logS	-3.4	ALOGPS

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00025159

Chemspider ID

23249479

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

14061706

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Ohishi K, Toume K, Arai MA, Sadhu SK, Ahmed F, Ishibashi M: Coronaridine, an iboga type alkaloid from Tabernaemontana divaricata, inhibits the Wnt signaling pathway by decreasing beta-catenin mRNA expression. Bioorg Med Chem Lett. 2015 Sep 15;25(18):3937-40. doi: 10.1016/j.bmcl.2015.07.036. Epub 2015 Jul 21. [PubMed:26231157 ]
Jin YS, Du JL, Chen HS, Jin L, Liang S: A new indole alkaloid from Ervatamia yunnanensis. Fitoterapia. 2010 Jan;81(1):63-5. doi: 10.1016/j.fitote.2009.07.008. Epub 2009 Jul 30. [PubMed:19647051 ]
Gogoi RR, Gogoi D, Bezbaruah RL: Virtual Screening of compounds from Tabernaemontana divaricata for potential anti-bacterial activity. Bioinformation. 2014 Mar 19;10(3):152-6. doi: 10.6026/97320630010152. eCollection 2014. [PubMed:24748755 ]
Liang S, Chen HS, Jin YS, Jin L, Lu J, Du JL: [Study on chemical constituents in rhigome of Ervatamia hainanensis]. Zhongguo Zhong Yao Za Zhi. 2007 Jul;32(13):1296-9. [PubMed:17879729 ]
LOTUS database [Link]

Showing NP-Card for methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate (NP0158906)

MOL for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

3D MOL for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

3D SDF for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

3D-SDF for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

PDB for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

3D PDB for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

SMILES for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

INCHI for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

Structure for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)

3D Structure for NP0158906 (methyl (1s,10r,15s,17s,18s)-17-ethyl-10-hydroxy-3,13-diazapentacyclo[13.3.1.0²,¹⁰.0⁴,⁹.0¹³,¹⁸]nonadeca-2,4,6,8-tetraene-1-carboxylate)