NP-MRD: Showing NP-Card for (2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate (NP0158430)

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Record Information

Version

2.0

Created at

2022-09-02 16:00:58 UTC

Updated at

2022-09-02 16:00:58 UTC

NP-MRD ID

NP0158430

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate

Description

Purpuroine C belongs to the class of organic compounds known as d-alpha-amino acids. These are alpha amino acids which have the D-configuration of the alpha-carbon atom. Based on a literature review very few articles have been published on Purpuroine C.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 36  0  0  0  0  0  0  0  0999 V2000
   -3.2679    1.4999   -0.5174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8020    0.2086   -0.0455 N   0  0  0  0  0  4  0  0  0  0  0  0
   -3.0442   -0.7481   -1.1115 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4781   -0.2170    1.1431 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3634    0.3118    0.1336 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7811   -0.8853    0.8123 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7102   -0.7094    0.9293 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3129   -0.5668   -0.3512 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6872   -0.3962   -0.4024 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2409    0.8702   -0.3646 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1995    2.2928   -0.2503 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    4.5930    1.0534   -0.4142 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4102   -0.0373   -0.5027 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2900    0.2288   -0.5710 Br  0  0  0  0  0  0  0  0  0  0  0  0
    4.8948   -1.3065   -0.5422 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5224   -1.4854   -0.4915 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8863   -3.0969   -0.5425 Cl  0  0  0  0  0  0  0  0  0  0  0  0
   -1.1030    1.5110    0.9770 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1874    2.6682    0.4940 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7662    1.3725    2.3071 O   0  0  0  0  0  1  0  0  0  0  0  0
   -2.5398    1.8760   -1.2409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2087    1.2863   -1.0988 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4753    2.2070    0.3115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5224   -0.3837   -2.0342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1244   -0.7276   -1.3542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7089   -1.7619   -0.8704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5675   -0.1454    0.9546 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1718    0.3588    2.0348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2611   -1.2912    1.3138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8894    0.4121   -0.8375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0282   -1.8363    0.3031 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1858   -0.9650    1.8443 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9707    0.1234    1.5924 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1578   -1.6234    1.3862 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0328    2.0420   -0.3851 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5680   -2.1393   -0.6118 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  2  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 10 12  1  0
 12 13  2  0
 13 14  1  0
 13 15  1  0
 15 16  2  0
 16 17  1  0
  5 18  1  0
 18 20  1  0
 18 19  2  0
 16  9  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  3 25  1  0
  3 26  1  0
  4 27  1  0
  4 28  1  0
  4 29  1  0
  5 30  1  6
  6 31  1  0
  6 32  1  0
  7 33  1  0
  7 34  1  0
 12 35  1  0
 15 36  1  0
M  CHG  2   2   1  20  -1
M  END


  Mrv1652309022218002D          

 20 20  0  0  1  0            999 V2000
    1.4289   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    1.7309   -4.4270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5559   -2.9980    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -2.8875    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  2  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  2  0  0  0  0
  9 16  1  0  0  0  0
 16 17  1  0  0  0  0
  5 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
M  CHG  2   2   1  20  -1
M  END
> <DATABASE_ID>
NP0158430

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[N+](C)(C)[C@H](CCOC1=C(Cl)C=C(Br)C=C1Cl)C([O-])=O

> <INCHI_IDENTIFIER>
InChI=1S/C13H16BrCl2NO3/c1-17(2,3)11(13(18)19)4-5-20-12-9(15)6-8(14)7-10(12)16/h6-7,11H,4-5H2,1-3H3/t11-/m1/s1

> <INCHI_KEY>
FNZSBVCUBBTGET-LLVKDONJSA-N

> <FORMULA>
C13H16BrCl2NO3

> <MOLECULAR_WEIGHT>
385.08

> <EXACT_MASS>
382.969062

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
33.47678690349086

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2R)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylazaniumyl)butanoate

> <ALOGPS_LOGP>
-0.58

> <JCHEM_LOGP>
-0.6013762308050791

> <ALOGPS_LOGS>
-6.81

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.3770373727698124

> <JCHEM_PKA_STRONGEST_BASIC>
-4.950527888983419

> <JCHEM_POLAR_SURFACE_AREA>
49.36

> <JCHEM_REFRACTIVITY>
105.2187

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.78e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       2.667  -6.160   0.000  0.00  0.00           C+0
HETATM    2  N   UNK     0       4.001  -6.930   0.000  0.00  0.00           N+1
HETATM    3  C   UNK     0       3.231  -8.264   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.771  -5.596   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       9.336  -6.930   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.003  -6.930   0.000  0.00  0.00           C+0
HETATM   11 Cl   UNK     0      12.003  -5.390   0.000  0.00  0.00          Cl+0
HETATM   12  C   UNK     0      13.337  -7.700   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   14 Br   UNK     0      14.670 -10.010   0.000  0.00  0.00          Br+0
HETATM   15  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   17 Cl   UNK     0       9.336 -10.010   0.000  0.00  0.00          Cl+0
HETATM   18  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.668 -10.010   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       4.001 -10.010   0.000  0.00  0.00           O-1
CONECT    1    2                                                            
CONECT    2    1    3    4    5                                             
CONECT    3    2                                                            
CONECT    4    2                                                            
CONECT    5    2    6   18                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   16                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16                                                       
CONECT   16   15    9   17                                                  
CONECT   17   16                                                            
CONECT   18    5   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₆BrCl₂NO₃

Average Mass

385.0800 Da

Monoisotopic Mass

382.96906 Da

IUPAC Name

(2R)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylazaniumyl)butanoate

Traditional Name

(2R)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate

CAS Registry Number

Not Available

SMILES

C[N+](C)(C)[C@H](CCOC1=C(Cl)C=C(Br)C=C1Cl)C([O-])=O

InChI Identifier

InChI=1S/C13H16BrCl2NO3/c1-17(2,3)11(13(18)19)4-5-20-12-9(15)6-8(14)7-10(12)16/h6-7,11H,4-5H2,1-3H3/t11-/m1/s1

InChI Key

FNZSBVCUBBTGET-LLVKDONJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as d-alpha-amino acids. These are alpha amino acids which have the D-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

D-alpha-amino acids

Alternative Parents

Substituents

D-alpha-amino acid
1,3-dichlorobenzene
Phenoxy compound
Phenol ether
Halobenzene
Alkyl aryl ether
Chlorobenzene
Bromobenzene
Benzenoid
Aryl bromide
Monocyclic benzene moiety
Aryl chloride
Aryl halide
Quaternary ammonium salt
Tetraalkylammonium salt
Carboxylic acid salt
Monocarboxylic acid or derivatives
Carboxylic acid
Ether
Organic nitrogen compound
Amine
Organohalogen compound
Organobromide
Organochloride
Organonitrogen compound
Organooxygen compound
Carbonyl group
Organic salt
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Organic cation
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.58	ALOGPS
logP	-0.6	ChemAxon
logS	-6.8	ALOGPS
pKa (Strongest Acidic)	1.38	ChemAxon
pKa (Strongest Basic)	-5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	49.36 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	105.22 m³·mol⁻¹	ChemAxon
Polarizability	33.48 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

28649646

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

71462927

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate (NP0158430)

MOL for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

3D MOL for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

3D SDF for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

3D-SDF for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

PDB for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

3D PDB for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

SMILES for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

INCHI for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

Structure for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)

3D Structure for NP0158430 ((2r)-4-(4-bromo-2,6-dichlorophenoxy)-2-(trimethylammonio)butanoate)