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Record Information
Version1.0
Created at2022-09-02 15:46:28 UTC
Updated at2022-09-02 15:46:28 UTC
NP-MRD IDNP0158221
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2e)-2-[(5s)-2-(2-hydroxyethyl)-5-(hydroxymethyl)-3,3,5-trimethylcyclopent-1-en-1-yl]but-2-en-1-ol
DescriptionSecobotrydiene-3,10,15-triol belongs to the class of organic compounds known as monocyclic monoterpenoids. These are monoterpenoids containing 1 ring in the isoprene chain. (2e)-2-[(5s)-2-(2-hydroxyethyl)-5-(hydroxymethyl)-3,3,5-trimethylcyclopent-1-en-1-yl]but-2-en-1-ol is found in Botrytis cinerea. It was first documented in 2005 (PMID: 15715253). Based on a literature review a small amount of articles have been published on Secobotrydiene-3,10,15-triol (PMID: 17256736) (PMID: 16706546) (PMID: 28215606).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC15H26O3
Average Mass254.3700 Da
Monoisotopic Mass254.18819 Da
IUPAC Name(2E)-2-[(5S)-2-(2-hydroxyethyl)-5-(hydroxymethyl)-3,3,5-trimethylcyclopent-1-en-1-yl]but-2-en-1-ol
Traditional Name(2E)-2-[(5S)-2-(2-hydroxyethyl)-5-(hydroxymethyl)-3,3,5-trimethylcyclopent-1-en-1-yl]but-2-en-1-ol
CAS Registry NumberNot Available
SMILES
C\C=C(\CO)C1=C(CCO)C(C)(C)C[C@]1(C)CO
InChI Identifier
InChI=1S/C15H26O3/c1-5-11(8-17)13-12(6-7-16)14(2,3)9-15(13,4)10-18/h5,16-18H,6-10H2,1-4H3/b11-5-/t15-/m1/s1
InChI KeyGYABYKLKVQPSPD-NVWZYQMFSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Botrytis cinereaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as monocyclic monoterpenoids. These are monoterpenoids containing 1 ring in the isoprene chain.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentMonocyclic monoterpenoids
Alternative Parents
Substituents
  • Monocyclic monoterpenoid
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Aliphatic homomonocyclic compound
Molecular FrameworkAliphatic homomonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.94ALOGPS
logP0.74ChemAxon
logS-2.9ALOGPS
pKa (Strongest Acidic)17.09ChemAxon
pKa (Strongest Basic)-1.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area60.69 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity75.41 m³·mol⁻¹ChemAxon
Polarizability29.59 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID78440244
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound101258396
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Riaz N, Nawaz SA, Mukhtar N, Malik A, Afza N, Ali S, Ullah S, Muhammad P, Choudhary MI: Isolation and enzyme-inhibition studies of the chemical constituents from Ajuga bracteosa. Chem Biodivers. 2007 Jan;4(1):72-83. doi: 10.1002/cbdv.200790008. [PubMed:17256736 ]
  2. Conrow RE: Allylic alcohol transposition by ortho ester-initiated carbonate extension. synthesis of the vasodilator 11(R),12(S),15(S)-trihydroxyeicosa- 5(Z),8(Z),13(E)-trienoic acid. Org Lett. 2006 May 25;8(11):2441-3. doi: 10.1021/ol0608808. [PubMed:16706546 ]
  3. Li B, Ali Z, Chan M, Li J, Wang M, Abe N, Wu CR, Khan IA, Wang W, Li SX: Chemical constituents of Pholidota cantonensis. Phytochemistry. 2017 May;137:132-138. doi: 10.1016/j.phytochem.2017.02.005. Epub 2017 Feb 16. [PubMed:28215606 ]
  4. Miyazawa M, Sugawara A: Biotransformation of alpha-bulnesene using a plant pathogenic fungus, Glomerella cingulata as a biocatalyst. Nat Prod Res. 2005 Feb;19(2):111-5. doi: 10.1080/14786410410001704697. [PubMed:15715253 ]
  5. LOTUS database [Link]