NP-MRD: Showing NP-Card for 5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate (NP0158173)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-02 15:42:48 UTC

Updated at

2022-09-02 15:42:48 UTC

NP-MRD ID

NP0158173

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

Description

5-[2-(3,5-Dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. 5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate is found in Hypericum thasium. 5-[2-(3,5-Dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004171511452D          

 31 33  0  0  0  0            999 V2000
    4.1801    3.1152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    2.2902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.0527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1331    0.5678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9177    0.8227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8781   -0.2169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3631   -0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1836   -0.7981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5191   -0.0444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3396    0.0418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6751    0.7955    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8245   -0.6256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4890   -1.3793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9739   -2.0467    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6685   -1.4655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -2.2192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8178   -2.8866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5124   -2.3054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1769   -3.0591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3564   -3.1453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0208   -3.8990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8715   -2.4779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2070   -1.7242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7221   -1.0568    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0275   -1.6380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0531   -0.2169    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7982    0.5678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0136    0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8421    1.6297    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  2  0  0  0  0
 20 27  1  0  0  0  0
  8 28  1  0  0  0  0
 28 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
M  END

     RDKit          3D

 51 53  0  0  0  0  0  0  0  0999 V2000
    1.9915    4.3628   -2.5839 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2050    2.8973   -2.5040 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1823    2.4218   -3.1606 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4076    2.0411   -1.7637 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6772    0.6748   -1.7403 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.9956    0.1724   -0.3467 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4126    0.5339    0.0316 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7541   -0.1403    1.2114 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8856   -1.2223   -0.5538 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6469   -1.3710   -1.1847 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3406   -1.3631   -0.2208 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3147   -2.2823    0.0319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4204   -3.3818   -0.7954 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3867   -4.3568   -0.5839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4892   -5.4734   -1.4277 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2544   -4.2254    0.4669 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1864   -3.1257    1.3324 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1149   -3.1051    2.3438 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2126   -2.1827    1.0870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0267   -1.0911    2.0102 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4358   -1.2510    3.2203 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4233    0.2013    1.7421 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6341    0.8811    2.6577 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1277    2.1442    2.4130 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6568    2.8129    3.3310 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4029    2.7754    1.2194 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1854    2.1231    0.2913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4747    2.7474   -0.9222 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6808    0.8499    0.5692 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4955   -0.1957   -2.1064 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5519   -0.5801   -3.4526 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9406    4.8770   -2.2845 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1501    4.6738   -1.9148 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7390    4.7092   -3.6018 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5632    0.4539   -2.3745 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3014    0.5434    0.4059 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1334    0.3378   -0.7685 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3937    1.6221    0.2947 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0686   -1.0744    0.9990 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6913   -2.2806   -1.8331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7829   -3.5743   -1.6526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9599   -6.3034   -1.1952 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0327   -4.9670    0.6743 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2081   -2.3943    3.0036 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4187    0.3857    3.5940 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6707    2.7351    3.3562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0294    3.7686    0.9762 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3186    3.3173   -0.9306 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3016    0.4034   -0.1901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4328    0.3887   -1.9488 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0815    0.0865   -3.9586 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 14 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  2  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  2  0
 23 24  1  0
 24 25  1  0
 24 26  2  0
 26 27  1  0
 27 28  1  0
 27 29  2  0
 10 30  1  0
 30 31  1  0
 30  5  1  0
 19 12  1  0
 29 22  1  0
  1 32  1  0
  1 33  1  0
  1 34  1  0
  5 35  1  6
  6 36  1  1
  7 37  1  0
  7 38  1  0
  8 39  1  0
 10 40  1  6
 13 41  1  0
 15 42  1  0
 16 43  1  0
 18 44  1  0
 23 45  1  0
 25 46  1  0
 26 47  1  0
 28 48  1  0
 29 49  1  0
 30 50  1  6
 31 51  1  0
M  END


  Mrv1533004171511452D          

 31 33  0  0  0  0            999 V2000
    4.1801    3.1152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1801    2.2902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8946    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.0527    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1331    0.5678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9177    0.8227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8781   -0.2169    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3631   -0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1836   -0.7981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5191   -0.0444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3396    0.0418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6751    0.7955    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8245   -0.6256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4890   -1.3793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9739   -2.0467    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6685   -1.4655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -2.2192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8178   -2.8866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5124   -2.3054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1769   -3.0591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3564   -3.1453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0208   -3.8990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8715   -2.4779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2070   -1.7242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7221   -1.0568    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0275   -1.6380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0531   -0.2169    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7982    0.5678    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0136    0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8421    1.6297    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  2  0  0  0  0
 10 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  2  0  0  0  0
 20 27  1  0  0  0  0
  8 28  1  0  0  0  0
 28 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0158173

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)OC1C(CO)OC(OC2=CC(O)=CC(O)=C2C(=O)C2=CC(O)=CC(O)=C2)C1O

> <INCHI_IDENTIFIER>
InChI=1S/C20H20O11/c1-8(22)29-19-15(7-21)31-20(18(19)28)30-14-6-12(25)5-13(26)16(14)17(27)9-2-10(23)4-11(24)3-9/h2-6,15,18-21,23-26,28H,7H2,1H3

> <INCHI_KEY>
LNTAZGGGJPTGSW-UHFFFAOYSA-N

> <FORMULA>
C20H20O11

> <MOLECULAR_WEIGHT>
436.369

> <EXACT_MASS>
436.100561464

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
40.39625791000771

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

> <ALOGPS_LOGP>
1.02

> <JCHEM_LOGP>
1.3681645039999997

> <ALOGPS_LOGS>
-2.61

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
8.369416248939496

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.095005275916416

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9818692121023904

> <JCHEM_POLAR_SURFACE_AREA>
183.20999999999998

> <JCHEM_REFRACTIVITY>
101.87140000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.06e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       7.803   5.815   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.803   4.275   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       9.137   3.505   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       6.469   3.505   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.469   1.965   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.715   1.060   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       9.180   1.536   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       7.239  -0.405   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       8.144  -1.651   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       9.676  -1.490   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.302  -0.083   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.834   0.078   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      12.460   1.485   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      12.739  -1.168   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.113  -2.575   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      13.018  -3.821   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      10.581  -2.736   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.955  -4.142   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      10.860  -5.388   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       8.423  -4.303   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.797  -5.710   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.265  -5.871   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.639  -7.278   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.360  -4.625   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.986  -3.219   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       5.081  -1.973   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       7.518  -3.058   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.699  -0.405   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       5.223   1.060   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.759   1.536   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       3.439   3.042   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   28                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   17                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   10   18                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   27                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   20                                                       
CONECT   28    8   29                                                       
CONECT   29   28    5   30                                                  
CONECT   30   29   31                                                       
CONECT   31   30                                                            
MASTER        0    0    0    0    0    0    0    0   31    0   66    0
END

View in JSmol

Synonyms

Value	Source
5-[2-(3,5-Dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetic acid	Generator

Chemical Formula

C₂₀H₂₀O₁₁

Average Mass

436.3690 Da

Monoisotopic Mass

436.10056 Da

IUPAC Name

5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

Traditional Name

5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)OC1C(CO)OC(OC2=CC(O)=CC(O)=C2C(=O)C2=CC(O)=CC(O)=C2)C1O

InChI Identifier

InChI=1S/C20H20O11/c1-8(22)29-19-15(7-21)31-20(18(19)28)30-14-6-12(25)5-13(26)16(14)17(27)9-2-10(23)4-11(24)3-9/h2-6,15,18-21,23-26,28H,7H2,1H3

InChI Key

LNTAZGGGJPTGSW-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hypericum thasium	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Phenolic glycosides

Alternative Parents

Substituents

Phenolic glycoside
Benzophenone
Diphenylmethane
Aryl-phenylketone
O-glycosyl compound
Pentose monosaccharide
Phenoxy compound
Phenol ether
Resorcinol
Aryl ketone
Benzoyl
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monosaccharide
Monocyclic benzene moiety
Tetrahydrofuran
Vinylogous acid
Carboxylic acid ester
Ketone
Secondary alcohol
Organoheterocyclic compound
Acetal
Carboxylic acid derivative
Oxacycle
Monocarboxylic acid or derivatives
Alcohol
Carbonyl group
Hydrocarbon derivative
Organic oxide
Primary alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.02	ALOGPS
logP	1.37	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	7.1	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	183.21 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	101.87 m³·mol⁻¹	ChemAxon
Polarizability	40.4 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

74817318

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate (NP0158173)

MOL for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D MOL for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D SDF for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D-SDF for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

PDB for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D PDB for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

SMILES for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

INCHI for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

Structure for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D Structure for NP0158173 (5-[2-(3,5-dihydroxybenzoyl)-3,5-dihydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)