NP-MRD: Showing NP-Card for 3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol (NP0158057)

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Record Information

Version

2.0

Created at

2022-09-02 15:34:59 UTC

Updated at

2022-09-02 15:34:59 UTC

NP-MRD ID

NP0158057

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol

Description

3-{[1-(2-Methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-6-{[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol belongs to the class of organic compounds known as n-alkylindoles. N-alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 1-position. 3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol is found in Penicillium simplicissimum. 3-{[1-(2-Methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-6-{[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251513352D          

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M  END

     RDKit          3D

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M  END


  Mrv1533004251513352D          

 38 42  0  0  0  0            999 V2000
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    0.0992    0.4992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6288    1.5387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1781    1.7103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2428   -2.5916    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.7948   -3.2047    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6018   -3.0331    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
  8 13  1  0  0  0  0
 13 14  1  0  0  0  0
  6 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 22 30  1  0  0  0  0
 25 30  1  0  0  0  0
 24 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 31 34  1  0  0  0  0
 34 35  2  0  0  0  0
 20 36  1  0  0  0  0
 36 37  1  0  0  0  0
 16 37  1  0  0  0  0
 37 38  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0158057

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)(C=C)N1C=C(CC2NC(=O)C(CC3=C(NC4=CC=CC=C34)C(C)(C)C=C)NC2=O)C2=CC=CC=C12

> <INCHI_IDENTIFIER>
InChI=1S/C32H36N4O2/c1-7-31(3,4)28-23(22-14-9-11-15-24(22)33-28)18-26-30(38)34-25(29(37)35-26)17-20-19-36(32(5,6)8-2)27-16-12-10-13-21(20)27/h7-16,19,25-26,33H,1-2,17-18H2,3-6H3,(H,34,38)(H,35,37)

> <INCHI_KEY>
CSKRCVQJKJFWGN-UHFFFAOYSA-N

> <FORMULA>
C32H36N4O2

> <MOLECULAR_WEIGHT>
508.666

> <EXACT_MASS>
508.283826415

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
55.556376969832115

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-{[1-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-6-{[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}piperazine-2,5-dione

> <ALOGPS_LOGP>
4.94

> <JCHEM_LOGP>
5.694854381666666

> <ALOGPS_LOGS>
-5.86

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.444651538872467

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.340043691904542

> <JCHEM_PKA_STRONGEST_BASIC>
-4.454222674313469

> <JCHEM_POLAR_SURFACE_AREA>
78.92

> <JCHEM_REFRACTIVITY>
152.31070000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.09e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-{[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}piperazine-2,5-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0       7.741  -9.762   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.741 -11.302   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.741 -12.842   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.281 -11.302   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.051 -12.635   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.201 -11.302   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       5.296 -12.548   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0       3.831 -12.072   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.497 -12.842   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.164 -12.072   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.164 -10.532   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.497  -9.762   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.831 -10.532   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.296 -10.056   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.772  -8.591   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       4.741  -7.447   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       3.235  -7.767   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0       2.204  -6.622   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       0.698  -6.943   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.680  -5.158   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.126  -2.549   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.650   1.408   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.114   1.884   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.185   0.932   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       1.174   2.872   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -0.333   3.192   0.000  0.00  0.00           C+0
HETATM   36  N   UNK     0       4.187  -4.838   0.000  0.00  0.00           N+0
HETATM   37  C   UNK     0       5.217  -5.982   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0       6.723  -5.662   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4    6                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4                                                            
CONECT    6    2    7   14                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    8   14                                                  
CONECT   14   13    6   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   37                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   36                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   30                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   31                                                  
CONECT   25   24   26   30                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   22   25                                                  
CONECT   31   24   32   33   34                                             
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   31   35                                                       
CONECT   35   34                                                            
CONECT   36   20   37                                                       
CONECT   37   36   16   38                                                  
CONECT   38   37                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   84    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₂H₃₆N₄O₂

Average Mass

508.6660 Da

Monoisotopic Mass

508.28383 Da

IUPAC Name

3-{[1-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-6-{[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}piperazine-2,5-dione

Traditional Name

3-{[2-(2-methylbut-3-en-2-yl)-1H-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}piperazine-2,5-dione

CAS Registry Number

Not Available

SMILES

CC(C)(C=C)N1C=C(CC2NC(=O)C(CC3=C(NC4=CC=CC=C34)C(C)(C)C=C)NC2=O)C2=CC=CC=C12

InChI Identifier

InChI=1S/C32H36N4O2/c1-7-31(3,4)28-23(22-14-9-11-15-24(22)33-28)18-26-30(38)34-25(29(37)35-26)17-20-19-36(32(5,6)8-2)27-16-12-10-13-21(20)27/h7-16,19,25-26,33H,1-2,17-18H2,3-6H3,(H,34,38)(H,35,37)

InChI Key

CSKRCVQJKJFWGN-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium simplicissimum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-alkylindoles. N-alkylindoles are compounds containing an indole moiety that carries an alkyl chain at the 1-position.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

N-alkylindoles

Direct Parent

N-alkylindoles

Alternative Parents

Substituents

N-alkylindole
3-alkylindole
Indole
Substituted pyrrole
Benzenoid
Pyrrole
Heteroaromatic compound
Cyclic carboximidic acid
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Azacycle
Organic nitrogen compound
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.94	ALOGPS
logP	5.69	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	11.34	ChemAxon
pKa (Strongest Basic)	-4.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	78.92 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	152.31 m³·mol⁻¹	ChemAxon
Polarizability	55.56 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol (NP0158057)

MOL for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

3D MOL for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

3D SDF for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

3D-SDF for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

PDB for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

3D PDB for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

SMILES for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

INCHI for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

Structure for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)

3D Structure for NP0158057 (3-{[2-(2-methylbut-3-en-2-yl)-1h-indol-3-yl]methyl}-6-{[1-(2-methylbut-3-en-2-yl)indol-3-yl]methyl}-3,6-dihydropyrazine-2,5-diol)