Np mrd loader

Record Information
Version1.0
Created at2022-09-02 15:27:10 UTC
Updated at2022-09-02 15:27:10 UTC
NP-MRD IDNP0157947
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2r,11s,13r)-22-chloro-2,5,28-trihydroxy-21-methoxy-7-methyl-14,16,19-trioxa-6-azaheptacyclo[15.11.1.0²,¹¹.0⁴,⁹.0¹³,²⁹.0¹⁸,²⁷.0²⁰,²⁵]nonacosa-1(29),4,6,8,17,20,22,24,27-nonaene-3,10,26-trione
DescriptionXantholipin belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring. It was first documented in 2020 (PMID: 32651204). Based on a literature review a significant number of articles have been published on Xantholipin (PMID: 35512262) (PMID: 34962769) (PMID: 34564766) (PMID: 32649177).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC27H18ClNO10
Average Mass551.8900 Da
Monoisotopic Mass551.06192 Da
IUPAC Name(2R,11S,13R)-22-chloro-2,5,28-trihydroxy-21-methoxy-7-methyl-14,16,19-trioxa-6-azaheptacyclo[15.11.1.0^{2,11}.0^{4,9}.0^{13,29}.0^{18,27}.0^{20,25}]nonacosa-1(29),4(9),5,7,17,20(25),21,23,27-nonaene-3,10,26-trione
Traditional Name(2R,11S,13R)-22-chloro-2,5,28-trihydroxy-21-methoxy-7-methyl-14,16,19-trioxa-6-azaheptacyclo[15.11.1.0^{2,11}.0^{4,9}.0^{13,29}.0^{18,27}.0^{20,25}]nonacosa-1(29),4(9),5,7,17,20(25),21,23,27-nonaene-3,10,26-trione
CAS Registry NumberNot Available
SMILES
COC1=C2OC3=C4OCO[C@@H]5C[C@@H]6C(=O)C7=CC(C)=NC(O)=C7C(=O)[C@]6(O)C(C(O)=C3C(=O)C2=CC=C1Cl)=C45
InChI Identifier
InChI=1S/C27H18ClNO10/c1-8-5-10-14(26(34)29-8)25(33)27(35)11(18(10)30)6-13-15-17(27)20(32)16-19(31)9-3-4-12(28)22(36-2)21(9)39-24(16)23(15)38-7-37-13/h3-5,11,13,32,35H,6-7H2,1-2H3,(H,29,34)/t11-,13-,27-/m1/s1
InChI KeyHSVRTPZWHMWONP-JUEDDRGBSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as xanthones. These are polycyclic aromatic compounds containing a xanthene moiety conjugated to a ketone group at carbon 9. Xanthene is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrans
Sub Class1-benzopyrans
Direct ParentXanthones
Alternative Parents
Substituents
  • Xanthone
  • Naphthopyranone
  • Phenanthrene
  • Naphthopyran
  • Chromone
  • Isoquinolone
  • Naphthalene
  • Tetralin
  • Anisole
  • Aryl alkyl ketone
  • Aryl ketone
  • Methylpyridine
  • Alkyl aryl ether
  • Pyranone
  • Pyridinone
  • Pyridine
  • Pyran
  • Benzenoid
  • Aryl halide
  • Aryl chloride
  • Heteroaromatic compound
  • Vinylogous amide
  • Vinylogous acid
  • Tertiary alcohol
  • Ketone
  • Lactam
  • Ether
  • Acetal
  • Oxacycle
  • Azacycle
  • Organochloride
  • Organic nitrogen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Organohalogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.94ALOGPS
logP3.64ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)8.76ChemAxon
pKa (Strongest Basic)0.26ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area161.71 ŲChemAxon
Rotatable Bond Count1ChemAxon
Refractivity133.15 m³·mol⁻¹ChemAxon
Polarizability51.48 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9181348
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11006158
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Leetanasaksakul K, Koomsiri W, Suga T, Matsuo H, Hokari R, Wattana-Amorn P, Takahashi YK, Shiomi K, Nakashima T, Inahashi Y, Thamchaipenet A: Sattahipmycin, a Hexacyclic Xanthone Produced by a Marine-Derived Streptomyces. J Nat Prod. 2022 May 27;85(5):1211-1217. doi: 10.1021/acs.jnatprod.1c00870. Epub 2022 May 5. [PubMed:35512262 ]
  2. Toplak M, Teufel R: Three Rings to Rule Them All: How Versatile Flavoenzymes Orchestrate the Structural Diversification of Natural Products. Biochemistry. 2022 Jan 18;61(2):47-56. doi: 10.1021/acs.biochem.1c00763. Epub 2021 Dec 28. [PubMed:34962769 ]
  3. Vela Gurovic MS, Diaz ML, Gallo CA, Dietrich J: Phylogenomics, CAZyome and core secondary metabolome of Streptomyces albus species. Mol Genet Genomics. 2021 Nov;296(6):1299-1311. doi: 10.1007/s00438-021-01823-9. Epub 2021 Sep 26. [PubMed:34564766 ]
  4. Kong L, Wang Q, Deng Z, You D: Flavin Adenine Dinucleotide-Dependent Halogenase XanH and Engineering of Multifunctional Fusion Halogenases. Appl Environ Microbiol. 2020 Sep 1;86(18):e01225-20. doi: 10.1128/AEM.01225-20. Print 2020 Sep 1. [PubMed:32651204 ]
  5. Kong L, Wang Q, Yang W, Shen J, Li Y, Zheng X, Wang L, Chu Y, Deng Z, Chooi YH, You D: Three Recently Diverging Duplicated Methyltransferases Exhibit Substrate-Dependent Regioselectivity Essential for Xantholipin Biosynthesis. ACS Chem Biol. 2020 Aug 21;15(8):2107-2115. doi: 10.1021/acschembio.0c00296. Epub 2020 Jul 23. [PubMed:32649177 ]
  6. LOTUS database [Link]