NP-MRD: Showing NP-Card for (1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol (NP0156612)

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Record Information

Version

2.0

Created at

2022-09-02 13:50:31 UTC

Updated at

2022-09-02 13:50:31 UTC

NP-MRD ID

NP0156612

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol

Description

(1'S,2R,2'S,4S,4'S,5S,7'S,8'R,9'S,12'S,13'R,15'R,16'R,18'R,19'R)-5,7',9',13'-tetramethyl-4,15'-bis({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]Icosane]-16',18',19'-triol belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative. (1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol is found in Allium karataviense. Based on a literature review very few articles have been published on (1'S,2R,2'S,4S,4'S,5S,7'S,8'R,9'S,12'S,13'R,15'R,16'R,18'R,19'R)-5,7',9',13'-tetramethyl-4,15'-bis({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]Icosane]-16',18',19'-triol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022215502D          

 56 63  0  0  1  0            999 V2000
    4.3030   -3.2858    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1170   -3.1521    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.4082   -2.3802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2223   -2.2464    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7452   -2.8845    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.4540   -3.6564    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6399   -3.7902    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3487   -4.5621    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5347   -4.6959    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0118   -4.0577    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1977   -4.1915    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6748   -3.5534    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8607   -3.6871    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9065   -4.9634    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0924   -5.0972    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4294   -5.6015    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.1382   -6.3734    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2435   -5.4678    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.7664   -6.1059    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1155   -2.1473    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9311   -2.2716    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.6640   -1.8929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2507   -2.4728    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.0743   -2.4249    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.4446   -1.6877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2682   -1.6397    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.6385   -0.9025    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7215   -2.3290    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.0918   -1.5918    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5451   -2.2811    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9984   -2.9704    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   13.8221   -2.9224    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.6282   -3.7076    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.0815   -4.3969    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.7112   -5.1341    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.1645   -5.8234    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.7942   -6.5606    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   13.2476   -7.2499    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0712   -7.2020    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.9706   -6.6086    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.6003   -7.3458    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.5173   -5.9193    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.6937   -5.9672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8876   -5.1821    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4343   -4.4928    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8046   -3.7555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3512   -3.0662    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.9810   -3.8035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5276   -3.1142    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   10.1573   -3.8514    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3337   -3.8994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8804   -3.2101    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.4351   -3.9046    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0648   -3.0857    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.3319   -3.4645    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2076   -4.2801    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  1  6  0  0  0
  9  8  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 11 14  1  0  0  0  0
 14 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
  9 18  1  0  0  0  0
 18 19  1  6  0  0  0
  5 20  1  1  0  0  0
 21 20  1  1  0  0  0
 21 22  1  0  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  6  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 33 34  1  6  0  0  0
 35 34  1  6  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  6  0  0  0
 38 39  1  0  0  0  0
 37 40  1  0  0  0  0
 40 41  1  1  0  0  0
 40 42  1  0  0  0  0
 42 43  1  6  0  0  0
 42 44  1  0  0  0  0
 35 44  1  0  0  0  0
 44 45  1  1  0  0  0
 33 46  1  0  0  0  0
 46 47  1  0  0  0  0
 28 47  1  0  0  0  0
 47 48  1  1  0  0  0
 47 49  1  0  0  0  0
 24 49  1  0  0  0  0
 49 50  1  1  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 23 52  1  0  0  0  0
 52 53  1  1  0  0  0
 54 52  1  1  0  0  0
 21 54  1  0  0  0  0
 54 55  1  0  0  0  0
  5 55  1  0  0  0  0
 55 56  1  6  0  0  0
M  END

     RDKit          3D

120127  0  0  0  0  0  0  0  0999 V2000
    6.0169    2.8512    0.3277 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3288    1.6956    1.2847 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.2359    1.4893    2.2875 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5074    0.3190    2.1136 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0073    0.3179    0.8319 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1505    0.0834   -0.1253 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4873    0.4637    0.4481 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.0663   -0.6133    1.1117 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2516   -1.0210    0.5143 C   0  0  2  0  0  0  0  0  0  0  0  0
    8.2366   -2.3428    0.0767 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2763   -2.4454   -0.8527 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.2318   -3.7209   -1.6518 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9982   -3.7159   -2.3324 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6190   -2.1773   -0.2230 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.3330   -1.1831   -0.8690 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5083   -1.8217    1.2358 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.2952   -2.9877    1.9931 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3615   -0.8784    1.5265 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.8683    0.4150    1.4002 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3728    1.5242    0.6134 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2046    1.4309    1.3267 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.1190    2.3195    0.7178 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0471    1.4195    0.7566 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2487    1.8124   -0.0419 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.6754    3.1905    0.3976 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0809    3.5138   -0.0626 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1424    3.7219   -1.4265 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0291    2.4339    0.3939 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8200    2.2908    1.7804 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4563    2.8165    0.1769 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3075    1.7161    0.7770 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.6339    2.1295    0.6891 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0475    0.4807   -0.0908 C   0  0  2  0  0  0  0  0  0  0  0  0
   -6.9925   -0.4959    0.1174 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7414   -0.7185   -1.0380 C   0  0  2  0  0  0  0  0  0  0  0  0
   -9.0231   -0.3038   -0.7661 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9829   -0.7633   -1.6383 C   0  0  2  0  0  0  0  0  0  0  0  0
  -11.3337   -0.3657   -1.0758 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4436   -0.9666    0.1785 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9923   -2.2838   -1.7363 C   0  0  1  0  0  0  0  0  0  0  0  0
  -11.0527   -2.6591   -2.5577 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6566   -2.6679   -2.3344 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.5806   -4.0675   -2.3110 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.5831   -2.1263   -1.4450 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.3701   -2.2394   -2.1502 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6304    0.0373    0.2145 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6605    1.1065   -0.2334 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.6926    1.1528   -1.7397 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3096    0.7519    0.2987 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7954   -0.5796   -0.1507 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5507   -0.9351    0.6337 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5255    0.0883    0.3434 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8512   -0.0081   -1.1221 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7135    0.0115    1.2257 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8964   -0.6884    0.6355 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2666   -1.9529    1.4181 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9544    3.4243    0.0696 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3270    3.5700    0.7739 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6348    2.4928   -0.6464 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2846    2.0016    1.7763 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5772    2.4057    2.2150 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6259    1.5631    3.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9144    0.6379   -1.0631 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1032   -0.9998   -0.4017 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1167    0.7532   -0.4517 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5247   -0.4060   -0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0997   -1.6020   -1.5844 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0062   -3.6488   -2.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.3444   -4.6169   -1.0383 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1195   -4.0712   -3.2460 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.2076   -3.1193   -0.3074 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.8352   -0.3759   -1.0717 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4780   -1.3828    1.5493 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.0981   -3.2016    2.5177 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9979   -1.0187    2.5681 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6278    0.9477    2.1772 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3230    1.6408    2.4094 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3785    2.6345   -0.2944 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9155    3.1946    1.4027 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3749    1.3078    1.8125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0497    1.8672   -1.1099 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9989    3.9095   -0.1068 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5671    3.3334    1.4809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3836    4.4519    0.4408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9940    4.1651   -1.6621 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2348    3.0380    2.2925 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1652309022215502D          

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M  END
> <DATABASE_ID>
NP0156612

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](C[C@H]3[C@@H]4C[C@@H](O)[C@@]5(O)C[C@@H](O)[C@@H](C[C@]5(C)[C@H]4CC[C@]23C)O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)O[C@]11C[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](C)CO1

> <INCHI_IDENTIFIER>
InChI=1S/C39H64O17/c1-15-14-51-39(11-22(15)52-34-32(48)30(46)28(44)24(12-40)54-34)16(2)27-21(56-39)8-19-17-7-26(43)38(50)9-20(42)23(10-37(38,4)18(17)5-6-36(19,27)3)53-35-33(49)31(47)29(45)25(13-41)55-35/h15-35,40-50H,5-14H2,1-4H3/t15-,16-,17+,18-,19-,20+,21-,22-,23+,24+,25+,26+,27-,28+,29+,30-,31-,32+,33+,34+,35+,36-,37+,38-,39+/m0/s1

> <INCHI_KEY>
VVQNZAZPPSZEDQ-ZOFFJVORSA-N

> <FORMULA>
C39H64O17

> <MOLECULAR_WEIGHT>
804.924

> <EXACT_MASS>
804.414350601

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_ATOM_COUNT>
120

> <JCHEM_AVERAGE_POLARIZABILITY>
84.99636071489803

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
11

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1'S,2R,2'S,4S,4'S,5S,7'S,8'R,9'S,12'S,13'R,15'R,16'R,18'R,19'R)-5,7',9',13'-tetramethyl-4,15'-bis({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane]-16',18',19'-triol

> <ALOGPS_LOGP>
-1.69

> <JCHEM_LOGP>
-2.569598299000001

> <ALOGPS_LOGS>
-2.71

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.395432219299426

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.893360433677438

> <JCHEM_PKA_STRONGEST_BASIC>
-3.2484534098376265

> <JCHEM_POLAR_SURFACE_AREA>
277.90999999999997

> <JCHEM_REFRACTIVITY>
189.4531

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.56e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1'S,2R,2'S,4S,4'S,5S,7'S,8'R,9'S,12'S,13'R,15'R,16'R,18'R,19'R)-5,7',9',13'-tetramethyl-4,15'-bis({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icosane]-16',18',19'-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       8.032  -6.134   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.552  -5.884   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.095  -4.443   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      11.615  -4.193   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      12.591  -5.384   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.048  -6.825   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.528  -7.075   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       9.984  -8.516   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       8.465  -8.766   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       7.489  -7.574   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       5.969  -7.824   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.993  -6.633   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       3.473  -6.883   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       5.425  -9.265   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       3.906  -9.515   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       6.402 -10.456   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       5.858 -11.897   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       7.921 -10.207   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.897 -11.398   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      13.282  -4.008   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      14.805  -4.240   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      16.173  -3.533   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      17.268  -4.616   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      18.805  -4.526   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      19.497  -3.150   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      21.034  -3.061   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      21.725  -1.685   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      21.880  -4.347   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      22.571  -2.971   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      23.418  -4.258   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      24.264  -5.545   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      25.801  -5.455   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      23.573  -6.921   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      24.419  -8.208   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      23.728  -9.584   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      24.574 -10.870   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      23.883 -12.247   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      24.729 -13.533   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      26.266 -13.444   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      22.345 -12.336   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      21.654 -13.712   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      21.499 -11.049   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      19.962 -11.139   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      22.190  -9.673   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      21.344  -8.386   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      22.035  -7.010   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      21.189  -5.724   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      20.498  -7.100   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      19.652  -5.813   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      18.960  -7.189   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      17.423  -7.279   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      16.577  -5.992   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      15.746  -7.289   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      15.054  -5.760   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      13.686  -6.467   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      13.454  -7.989   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   20   55                                             
CONECT    6    5    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   18                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   14                                                  
CONECT   12   11   13                                                       
CONECT   13   12                                                            
CONECT   14   11   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16    9   19                                                  
CONECT   19   18                                                            
CONECT   20    5   21                                                       
CONECT   21   20   22   54                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   52                                                  
CONECT   24   23   25   49                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30   47                                             
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   46                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   44                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38   40                                                  
CONECT   38   37   39                                                       
CONECT   39   38                                                            
CONECT   40   37   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   35   45                                                  
CONECT   45   44                                                            
CONECT   46   33   47                                                       
CONECT   47   46   28   48   49                                             
CONECT   48   47                                                            
CONECT   49   47   24   50                                                  
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   23   53   54                                             
CONECT   53   52                                                            
CONECT   54   52   21   55                                                  
CONECT   55   54    5   56                                                  
CONECT   56   55                                                            
MASTER        0    0    0    0    0    0    0    0   56    0  126    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₉H₆₄O₁₇

Average Mass

804.9240 Da

Monoisotopic Mass

804.41435 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](C[C@H]3[C@@H]4C[C@@H](O)[C@@]5(O)C[C@@H](O)[C@@H](C[C@]5(C)[C@H]4CC[C@]23C)O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)O[C@]11C[C@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](C)CO1

InChI Identifier

InChI=1S/C39H64O17/c1-15-14-51-39(11-22(15)52-34-32(48)30(46)28(44)24(12-40)54-34)16(2)27-21(56-39)8-19-17-7-26(43)38(50)9-20(42)23(10-37(38,4)18(17)5-6-36(19,27)3)53-35-33(49)31(47)29(45)25(13-41)55-35/h15-35,40-50H,5-14H2,1-4H3/t15-,16-,17+,18-,19-,20+,21-,22-,23+,24+,25+,26+,27-,28+,29+,30-,31-,32+,33+,34+,35+,36-,37+,38-,39+/m0/s1

InChI Key

VVQNZAZPPSZEDQ-ZOFFJVORSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Allium karataviense	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal saponins. These are saponins in which the aglycone moiety is a steroid. The steroidal aglycone is usually a spirostane, furostane, spirosolane, solanidane, or curcubitacin derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal saponins

Alternative Parents

Substituents

Steroidal saponin
Triterpenoid
Spirostane skeleton
3-hydroxysteroid
6-hydroxysteroid
5-hydroxysteroid
3-beta-hydroxysteroid
Hydroxysteroid
Glycosyl compound
O-glycosyl compound
Ketal
Monosaccharide
Oxane
Cyclic alcohol
Tetrahydrofuran
Tertiary alcohol
Secondary alcohol
Acetal
Organoheterocyclic compound
Oxacycle
Polyol
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Organooxygen compound
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.7	ALOGPS
logP	-2.6	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	11.89	ChemAxon
pKa (Strongest Basic)	-3.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	17	ChemAxon
Hydrogen Donor Count	11	ChemAxon
Polar Surface Area	277.91 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	189.45 m³·mol⁻¹	ChemAxon
Polarizability	85 Å³	ChemAxon
Number of Rings	8	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8852170

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10676822

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol (NP0156612)

MOL for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

3D MOL for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

3D SDF for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

3D-SDF for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

PDB for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

3D PDB for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

SMILES for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

INCHI for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

Structure for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)

3D Structure for NP0156612 ((1's,2r,2's,4s,4's,5s,7's,8'r,9's,12's,13'r,15'r,16'r,18'r,19'r)-5,7',9',13'-tetramethyl-4,15'-bis({[(2r,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosane]-16',18',19'-triol)