Np mrd loader

Record Information
Version2.0
Created at2022-09-02 13:17:00 UTC
Updated at2022-09-02 13:17:00 UTC
NP-MRD IDNP0156114
Secondary Accession NumbersNone
Natural Product Identification
Common Name4,5-dibromo-n-{[(1s,2s,3s,4r,5s,6r,10r,12s)-3-{[(4,5-dibromo-1h-pyrrol-2-yl)formamido]methyl}-2,6-dihydroxy-8,14-diimino-11-oxa-7,9,13,15-tetraazatetracyclo[10.3.0.0¹,⁵.0⁶,¹⁰]pentadecan-4-yl]methyl}-1h-pyrrole-2-carboxamide
DescriptionMassadine belongs to the class of organic compounds known as iridoids and derivatives. These are monoterpenes containing a skeleton structurally characterized by the presence of a cylopentane fused to a pyran ( forming a 4,7-dimethylcyclopenta[c]pyran), or a derivative where the pentane moiety is open. 4,5-dibromo-n-{[(1s,2s,3s,4r,5s,6r,10r,12s)-3-{[(4,5-dibromo-1h-pyrrol-2-yl)formamido]methyl}-2,6-dihydroxy-8,14-diimino-11-oxa-7,9,13,15-tetraazatetracyclo[10.3.0.0¹,⁵.0⁶,¹⁰]pentadecan-4-yl]methyl}-1h-pyrrole-2-carboxamide was first documented in 2017 (PMID: 28212701). Based on a literature review a small amount of articles have been published on massadine (PMID: 32599876) (PMID: 30192150) (PMID: 29897770) (PMID: 27933858).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC22H24Br4N10O5
Average Mass828.1150 Da
Monoisotopic Mass823.86647 Da
IUPAC Name4,5-dibromo-N-{[(1S,2S,3S,4R,5S,6R,10R,12S)-3-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-2,6-dihydroxy-8,14-diimino-11-oxa-7,9,13,15-tetraazatetracyclo[10.3.0.0^{1,5}.0^{6,10}]pentadecan-4-yl]methyl}-1H-pyrrole-2-carboxamide
Traditional Name4,5-dibromo-N-{[(1S,2S,3S,4R,5S,6R,10R,12S)-3-{[(4,5-dibromo-1H-pyrrol-2-yl)formamido]methyl}-2,6-dihydroxy-8,14-diimino-11-oxa-7,9,13,15-tetraazatetracyclo[10.3.0.0^{1,5}.0^{6,10}]pentadecan-4-yl]methyl}-1H-pyrrole-2-carboxamide
CAS Registry NumberNot Available
SMILES
O[C@H]1[C@H](CNC(=O)C2=CC(Br)=C(Br)N2)[C@@H](CNC(=O)C2=CC(Br)=C(Br)N2)[C@@H]2[C@]3(O)NC(=N)N[C@@H]3O[C@@H]3NC(=N)N[C@]123
InChI Identifier
InChI=1S/C22H24Br4N10O5/c23-7-1-9(31-13(7)25)15(38)29-3-5-6(4-30-16(39)10-2-8(24)14(26)32-10)12(37)21-11(5)22(40)18(34-20(28)36-22)41-17(21)33-19(27)35-21/h1-2,5-6,11-12,17-18,31-32,37,40H,3-4H2,(H,29,38)(H,30,39)(H3,27,33,35)(H3,28,34,36)/t5-,6-,11+,12+,17+,18-,21+,22-/m1/s1
InChI KeyMJHZRZBAUGHJOJ-RVJSRHHYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as iridoids and derivatives. These are monoterpenes containing a skeleton structurally characterized by the presence of a cylopentane fused to a pyran ( forming a 4,7-dimethylcyclopenta[c]pyran), or a derivative where the pentane moiety is open.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassMonoterpenoids
Direct ParentIridoids and derivatives
Alternative Parents
Substituents
  • Aromatic monoterpenoid
  • 11-noriridane monoterpenoid
  • 2-heteroaryl carboxamide
  • Pyrrole-2-carboxamide
  • Pyrrole-2-carboxylic acid or derivatives
  • Aryl bromide
  • Aryl halide
  • Oxane
  • Substituted pyrrole
  • Cyclic alcohol
  • 2-imidazoline
  • Heteroaromatic compound
  • Pyrrole
  • Carboxamide group
  • Guanidine
  • Secondary alcohol
  • Secondary carboxylic acid amide
  • Organic 1,3-dipolar compound
  • Organoheterocyclic compound
  • Azacycle
  • Carboximidamide
  • Propargyl-type 1,3-dipolar organic compound
  • Carboxylic acid derivative
  • Alkanolamine
  • Oxacycle
  • Organooxygen compound
  • Hydrocarbon derivative
  • Organohalogen compound
  • Organic oxide
  • Organobromide
  • Alcohol
  • Organopnictogen compound
  • Organic oxygen compound
  • Organonitrogen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP1.31ALOGPS
logP-0.82ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)9.69ChemAxon
pKa (Strongest Basic)13.49ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count12ChemAxon
Polar Surface Area235.29 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity177.64 m³·mol⁻¹ChemAxon
Polarizability64.78 ųChemAxon
Number of Rings6ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9128429
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10953212
PDB IDNot Available
ChEBI ID73199
Good Scents IDNot Available
References
General References
  1. Lindel T: Chemistry and Biology of the Pyrrole-Imidazole Alkaloids. Alkaloids Chem Biol. 2017;77:117-219. doi: 10.1016/bs.alkal.2016.12.001. Epub 2017 Jan 20. [PubMed:28212701 ]
  2. Kock M, Reggelin M, Immel S: The Advanced Floating Chirality Distance Geometry Approach-How Anisotropic NMR Parameters Can Support the Determination of the Relative Configuration of Natural Products. Mar Drugs. 2020 Jun 24;18(6):330. doi: 10.3390/md18060330. [PubMed:32599876 ]
  3. Ray A, Yousufuddin M, Gout D, Lovely CJ: Intramolecular Diels-Alder Reaction of a Silyl-Substituted Vinylimidazole en Route to the Fully Substituted Cyclopentane Core of Oroidin Dimers. Org Lett. 2018 Sep 21;20(18):5964-5968. doi: 10.1021/acs.orglett.8b02675. Epub 2018 Sep 7. [PubMed:30192150 ]
  4. Cannon JS: A Nitrone Dipolar Cycloaddition Strategy toward an Enantioselective Synthesis of Massadine. Org Lett. 2018 Jul 6;20(13):3883-3887. doi: 10.1021/acs.orglett.8b01464. Epub 2018 Jun 13. [PubMed:29897770 ]
  5. Ma Z, You L, Chen C: Stereocontrolled Formation of a [4.4]Heterospiro Ring System with Unexpected Inversion of Configuration at the Spirocenter. J Org Chem. 2017 Jan 6;82(1):731-736. doi: 10.1021/acs.joc.6b02266. Epub 2016 Dec 20. [PubMed:27933858 ]
  6. LOTUS database [Link]