NP-MRD: Showing NP-Card for (2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium (NP0155599)

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Record Information

Version

2.0

Created at

2022-09-02 12:41:18 UTC

Updated at

2022-09-02 12:41:18 UTC

NP-MRD ID

NP0155599

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium

Description

Pc(o-18:1(4Z)/0:0) Belongs to the class of organic compounds known as monoalkylglycerophosphocholines. Monoalkylglycerophosphocholines are compounds containing glycerophosphocholine moiety attached to an fatty acyl chain through an ether bond. Thus, PC(O-18:1(4Z)/0:0) Is considered to be a glycerophosphocholine. Based on a literature review very few articles have been published on Pc(o-18:1(4Z)/0:0).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022214412D          

 34 33  0  0  1  0            999 V2000
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 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 31 34  1  0  0  0  0
M  CHG  2  27  -1  31   1
M  END

     RDKit          3D

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 34 87  1  0
 34 88  1  0
M  CHG  2  27  -1  31   1
M  END


  Mrv1652309022214412D          

 34 33  0  0  1  0            999 V2000
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   21.1914   -3.1599    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.9059   -2.7474    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.6203   -3.1599    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.3348   -2.7474    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   24.0493   -2.3349    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.7473   -3.4618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.9223   -2.0329    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 31 34  1  0  0  0  0
M  CHG  2  27  -1  31   1
M  END
> <DATABASE_ID>
NP0155599

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCC\C=C/CCCOC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C26H54NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-31-24-26(28)25-33-34(29,30)32-23-21-27(2,3)4/h17-18,26,28H,5-16,19-25H2,1-4H3/b18-17-/t26-/m1/s1

> <INCHI_KEY>
GQXMQJMHHCTPEB-FFFOYBKKSA-N

> <FORMULA>
C26H54NO6P

> <MOLECULAR_WEIGHT>
507.693

> <EXACT_MASS>
507.368875461

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
88

> <JCHEM_AVERAGE_POLARIZABILITY>
61.50100527446833

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-2-hydroxy-3-[(4Z)-octadec-4-en-1-yloxy]propyl phosphono]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
2.85

> <JCHEM_LOGP>
2.100753746194921

> <ALOGPS_LOGS>
-6.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.6803590120523

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.855344141517691

> <JCHEM_PKA_STRONGEST_BASIC>
-3.393177964654652

> <JCHEM_POLAR_SURFACE_AREA>
88.05

> <JCHEM_REFRACTIVITY>
152.83769999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
25

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.50e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-2-hydroxy-3-[(4Z)-octadec-4-en-1-yloxy]propyl phosphono]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       8.883  -6.668   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.216  -7.438   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      11.550  -6.668   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      12.884  -7.438   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      14.217  -6.668   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      15.551  -7.438   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      16.885  -6.668   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      18.218  -7.438   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      19.552  -6.668   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      20.886  -7.438   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      22.219  -6.668   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      23.553  -7.438   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      24.887  -6.668   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      26.220  -7.438   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      27.554  -6.668   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      27.554  -5.128   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      28.888  -4.358   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      30.222  -5.128   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      31.555  -4.358   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      32.889  -5.128   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      34.223  -4.358   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      34.223  -2.818   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      35.556  -5.128   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      36.890  -4.358   0.000  0.00  0.00           O+0
HETATM   25  P   UNK     0      38.224  -5.128   0.000  0.00  0.00           P+0
HETATM   26  O   UNK     0      37.454  -6.462   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0      38.994  -3.795   0.000  0.00  0.00           O-1
HETATM   28  O   UNK     0      39.557  -5.898   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0      40.891  -5.128   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      42.225  -5.898   0.000  0.00  0.00           C+0
HETATM   31  N   UNK     0      43.558  -5.128   0.000  0.00  0.00           N+1
HETATM   32  C   UNK     0      44.892  -4.358   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      44.328  -6.462   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      42.788  -3.795   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27   28                                             
CONECT   26   25                                                            
CONECT   27   25                                                            
CONECT   28   25   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   33   34                                             
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   31                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₅₄NO₆P

Average Mass

507.6930 Da

Monoisotopic Mass

507.36888 Da

IUPAC Name

(2-{[(2R)-2-hydroxy-3-[(4Z)-octadec-4-en-1-yloxy]propyl phosphono]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2R)-2-hydroxy-3-[(4Z)-octadec-4-en-1-yloxy]propyl phosphono]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCC\C=C/CCCOC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C

InChI Identifier

InChI=1S/C26H54NO6P/c1-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-22-31-24-26(28)25-33-34(29,30)32-23-21-27(2,3)4/h17-18,26,28H,5-16,19-25H2,1-4H3/b18-17-/t26-/m1/s1

InChI Key

GQXMQJMHHCTPEB-FFFOYBKKSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as monoalkylglycerophosphocholines. Monoalkylglycerophosphocholines are compounds containing glycerophosphocholine moiety attached to an fatty acyl chain through an ether bond.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

Monoalkylglycerophosphocholines

Alternative Parents

Substituents

Monoalkylglycerophosphocholine
Phosphocholine
Choline
Glycerol ether
Dialkyl phosphate
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Tetraalkylammonium salt
Quaternary ammonium salt
Secondary alcohol
Ether
Dialkyl ether
Alcohol
Organic salt
Hydrocarbon derivative
Organic oxide
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Amine
Organic cation
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.85	ALOGPS
logP	2.1	ChemAxon
logS	-6.4	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-3.4	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	88.05 Å²	ChemAxon
Rotatable Bond Count	25	ChemAxon
Refractivity	152.84 m³·mol⁻¹	ChemAxon
Polarizability	61.5 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8777084

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10601711

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium (NP0155599)

MOL for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

3D MOL for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

3D SDF for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

3D-SDF for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

PDB for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

3D PDB for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

SMILES for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

INCHI for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

Structure for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)

3D Structure for NP0155599 ((2-{[(2r)-2-hydroxy-3-[(4z)-octadec-4-en-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium)