NP-MRD: Showing NP-Card for (-)-sparteine (NP0155238)

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Record Information

Version

2.0

Created at

2022-09-02 12:15:52 UTC

Updated at

2022-09-02 12:15:52 UTC

NP-MRD ID

NP0155238

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(-)-sparteine

Description

Sparteine belongs to the class of organic compounds known as sparteine, lupanine, and related alkaloids. These are alkaloids with a structure based on either sparteine, lupanine, or derivatives thereof. These are tetracyclic compounds made of two fused quinolizidine ring systems. It is a sodium channel blocker so it falls under the category of class 1a antiarrhythmic agents. Sparteine is a very strong basic compound (based on its pKa). Sparteine is a plant alkaloid derived from Cytisus scoparius and Lupinus mutabilis which may chelate calcium and magnesium. (-)-sparteine is found in Bolusanthus speciosus, Lupinus excubitus, Lupinus sericeus, Spartium junceum and Ulex airensis. Sparteine is not currently FDA approved for human use.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 43 46  0  0  0  0  0  0  0  0999 V2000
    3.6900    0.9642   -0.8796 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8168    1.0080    0.6355 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4264    1.0642    1.2092 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7621   -0.1836    0.8115 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7493   -0.5811    1.7049 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4542   -1.2218    1.0737 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0730   -2.1251   -0.0314 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5649   -1.1523   -1.1128 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7173   -0.5718   -1.7200 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8037   -0.5642   -0.7899 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8631    0.2496   -1.3353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3805    1.2759   -0.3568 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8175    0.5141    0.8866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6217   -0.1807    1.4410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4317   -0.1954    0.5402 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4416   -0.0893   -0.5593 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7669   -0.1249   -1.3365 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2713    1.9384   -1.1911 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6743    0.7903   -1.3174 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3946    0.1396    0.9918 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3399    1.9234    0.9273 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8891    1.8837    0.6503 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3947    1.2346    2.2831 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1869   -1.3571    2.4010 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3805    0.2226    2.3836 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9454   -1.8967    1.8113 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9194   -2.6997    0.3777 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7073   -2.7618   -0.4530 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0530   -1.7637   -1.8746 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0262   -1.2421   -2.5737 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5410    0.4180   -2.1634 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7319   -0.3457   -1.6760 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5150    0.8169   -2.2312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5680    1.9943   -0.1206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2534    1.7671   -0.8150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2938    1.1914    1.6070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5917   -0.2066    0.5457 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3187    0.3660    2.3764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9109   -1.1955    1.7808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9711    0.8332    0.5880 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9913    0.9059   -0.8459 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4811    0.0923   -2.3923 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1970   -1.1348   -1.2508 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
  8 16  1  0
 16 17  1  0
 17  1  1  0
 16  4  1  0
 15  6  1  0
 15 10  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  1
  7 27  1  0
  7 28  1  0
  8 29  1  6
  9 30  1  0
  9 31  1  0
 11 32  1  0
 11 33  1  0
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 14 39  1  0
 15 40  1  6
 16 41  1  1
 17 42  1  0
 17 43  1  0
M  END

7014
  Mrv0541 02241213002D          

 17 20  0  0  1  0            999 V2000
    6.5638   -0.4613    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.6588   -0.1278    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4195    0.9662    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6244    0.2012    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.4811    0.3264    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2743   -0.6262    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.0029    1.7445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8402   -0.7833    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9426    0.6117    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1408    0.8215    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1578   -1.4428    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3121   -0.8083    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8843   -0.4115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8971    0.4919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3900   -1.7445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9833   -0.3286    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7489   -1.2252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  6  0  0  0
  1  8  1  0  0  0  0
  1 12  1  0  0  0  0
  6  2  1  6  0  0  0
  2  9  1  0  0  0  0
  2 13  1  0  0  0  0
  3  5  1  0  0  0  0
  3  7  1  6  0  0  0
  3  9  1  0  0  0  0
  4  6  1  0  0  0  0
  4  7  1  1  0  0  0
  4  8  1  0  0  0  0
  5 10  1  0  0  0  0
  6 11  1  0  0  0  0
 10 14  1  0  0  0  0
 11 15  1  0  0  0  0
 12 16  1  0  0  0  0
 13 17  1  0  0  0  0
 14 16  1  0  0  0  0
 15 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0155238

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C1CCN2C[C@@H]3C[C@@H](CN4CCCC[C@@H]34)[C@@H]2C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H26N2/c1-3-7-16-11-13-9-12(14(16)5-1)10-17-8-4-2-6-15(13)17/h12-15H,1-11H2/t12-,13-,14-,15-/m0/s1

> <INCHI_KEY>
SLRCCWJSBJZJBV-AJNGGQMLSA-N

> <FORMULA>
C15H26N2

> <MOLECULAR_WEIGHT>
234.3803

> <EXACT_MASS>
234.209598842

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
28.40193474616442

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,2S,9S,10S)-7,15-diazatetracyclo[7.7.1.0²,⁷.0¹⁰,¹⁵]heptadecane

> <ALOGPS_LOGP>
2.98

> <JCHEM_LOGP>
2.027827476999999

> <ALOGPS_LOGS>
-2.40

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
2

> <JCHEM_PKA_STRONGEST_BASIC>
9.46023077227616

> <JCHEM_POLAR_SURFACE_AREA>
6.48

> <JCHEM_REFRACTIVITY>
71.82300000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.31e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(-)-sparteine

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    MOLECULE: 7014                                              
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  N   UNK     0      12.252  -0.861   0.000  0.00  0.00           N+0
HETATM    2  N   UNK     0       4.963  -0.239   0.000  0.00  0.00           N+0
HETATM    3  C   UNK     0       8.250   1.804   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.632   0.376   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.098   0.609   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.112  -1.169   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.339   3.256   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      10.902  -1.462   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.493   1.142   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.329   1.533   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.895  -2.693   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.649  -1.509   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.517  -0.768   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      14.741   0.918   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.461  -3.256   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      14.902  -0.613   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       3.265  -2.287   0.000  0.00  0.00           C+0
CONECT    1    5    8   12                                                  
CONECT    2    6    9   13                                                  
CONECT    3    5    7    9                                                  
CONECT    4    6    7    8                                                  
CONECT    5    1    3   10                                                  
CONECT    6    2    4   11                                                  
CONECT    7    3    4                                                       
CONECT    8    1    4                                                       
CONECT    9    2    3                                                       
CONECT   10    5   14                                                       
CONECT   11    6   15                                                       
CONECT   12    1   16                                                       
CONECT   13    2   17                                                       
CONECT   14   10   16                                                       
CONECT   15   11   17                                                       
CONECT   16   12   14                                                       
CONECT   17   13   15                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₆N₂

Average Mass

234.3803 Da

Monoisotopic Mass

234.20960 Da

IUPAC Name

(1S,2S,9S,10S)-7,15-diazatetracyclo[7.7.1.0²,⁷.0¹⁰,¹⁵]heptadecane

Traditional Name

(-)-sparteine

CAS Registry Number

Not Available

SMILES

C1CCN2C[C@@H]3C[C@@H](CN4CCCC[C@@H]34)[C@@H]2C1

InChI Identifier

InChI=1S/C15H26N2/c1-3-7-16-11-13-9-12(14(16)5-1)10-17-8-4-2-6-15(13)17/h12-15H,1-11H2/t12-,13-,14-,15-/m0/s1

InChI Key

SLRCCWJSBJZJBV-AJNGGQMLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Bolusanthus speciosus	LOTUS Database	35616633
Lupinus excubitus	LOTUS Database	35616633
Lupinus sericeus	LOTUS Database	35616633
Spartium junceum	LOTUS Database	35616633
Ulex airensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sparteine, lupanine, and related alkaloids. These are alkaloids with a structure based on either sparteine, lupanine, or derivatives thereof. These are tetracyclic compounds made of two fused quinolizidine ring systems.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Lupin alkaloids

Sub Class

Sparteine, lupanine, and related alkaloids

Direct Parent

Sparteine, lupanine, and related alkaloids

Alternative Parents

Substituents

Sparteine-lupanine skeleton
Quinolizidine
Piperidine
Tertiary aliphatic amine
Tertiary amine
Azacycle
Organoheterocyclic compound
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.98	ALOGPS
logP	2.03	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Basic)	9.46	ChemAxon
Physiological Charge	2	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	6.48 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	71.82 m³·mol⁻¹	ChemAxon
Polarizability	28.4 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

DB06727

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Sparteine

METLIN ID

Not Available

PubChem Compound

168213

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (-)-sparteine (NP0155238)

MOL for NP0155238 ((-)-sparteine)

3D MOL for NP0155238 ((-)-sparteine)

3D SDF for NP0155238 ((-)-sparteine)

3D-SDF for NP0155238 ((-)-sparteine)

PDB for NP0155238 ((-)-sparteine)

3D PDB for NP0155238 ((-)-sparteine)

SMILES for NP0155238 ((-)-sparteine)

INCHI for NP0155238 ((-)-sparteine)

Structure for NP0155238 ((-)-sparteine)

3D Structure for NP0155238 ((-)-sparteine)