NP-MRD: Showing NP-Card for {2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid (NP0155150)

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Record Information

Version

1.0

Created at

2022-09-02 12:09:31 UTC

Updated at

2022-09-02 12:09:31 UTC

NP-MRD ID

NP0155150

Secondary Accession Numbers

None

Natural Product Identification

Common Name

{2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid

Description

Norecasantalic acid, also known as norecasantalate, belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other. Norecasantalic acid is a weakly acidic compound (based on its pKa). Outside of the human body, norecasantalic acid has been detected, but not quantified in, cereals and cereal products. {2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid is found in Santalum album. It was first documented in 2000 (PMID: 11413487). This could make norecasantalic acid a potential biomarker for the consumption of these foods (PMID: 16902246) (PMID: 17374880) (PMID: 20044567).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 31  0  0  0  0  0  0  0  0999 V2000
   -0.0174    1.8614    1.2885 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4279    0.7917    0.3226 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.1188    1.0556   -0.9411 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6580   -0.0864   -1.8603 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5097   -1.1642   -0.8447 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9276   -1.0504   -0.2413 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8611    0.4239    0.1586 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.2511   -0.5334    0.2866 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1939   -1.2796    1.5569 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7073   -0.5707    0.2153 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3920    0.0261   -0.9117 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7025   -0.6569   -1.9148 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7210    1.3696   -0.9096 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0033    2.2006    1.0375 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0840    1.5454    2.3339 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6872    2.7399    1.1071 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3057    2.0354   -1.3556 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5410   -0.2736   -2.5143 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1899    0.1716   -2.4671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2403   -2.1369   -1.1490 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0928   -1.7291    0.5866 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6846   -1.1403   -1.0547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6705    0.8807    0.7078 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6600   -1.2173    2.2845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3116   -2.3488    1.3381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0382   -0.7944    2.0513 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0273   -1.6580    0.2497 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1264   -0.1824    1.1958 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5895    1.7204   -0.5566 H   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1
  2  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  5  8  1  0
  8  9  1  1
  8 10  1  0
 10 11  1  0
 11 13  1  0
 11 12  2  0
  3  2  1  0
  8  2  1  0
  3  7  1  0
  1 14  1  0
  1 15  1  0
  1 16  1  0
  7 23  1  1
  6 21  1  0
  6 22  1  0
  5 20  1  6
  4 18  1  0
  4 19  1  0
  3 17  1  6
  9 24  1  0
  9 25  1  0
  9 26  1  0
 10 27  1  0
 10 28  1  0
 13 29  1  0
M  END


  Mrv0541 02241207422D          

 13 15  0  0  0  0            999 V2000
   -0.4247   -1.6992    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4247   -1.8207    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8492   -1.0922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3032   -0.9102    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2427   -1.1532    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4858   -0.6067    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2137   -0.3032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0922   -0.0003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3032   -0.3032    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0608    0.4247    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5456    1.0922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2422    1.8207    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2137    1.4567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1  5  1  0  0  0  0
  1  6  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  9  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  6  9  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0155150

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC12C3CC(CC13)C2(C)CC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C11H16O2/c1-10(5-9(12)13)6-3-7-8(4-6)11(7,10)2/h6-8H,3-5H2,1-2H3,(H,12,13)

> <INCHI_KEY>
LDSSHHGVKDZTIX-UHFFFAOYSA-N

> <FORMULA>
C11H16O2

> <MOLECULAR_WEIGHT>
180.2435

> <EXACT_MASS>
180.115029756

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
19.710409631490307

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-{2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid

> <ALOGPS_LOGP>
2.03

> <JCHEM_LOGP>
1.5657708113333326

> <ALOGPS_LOGS>
-2.45

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.713796946496545

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
48.1582

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.45e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
{2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      -0.793  -3.172   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.793  -3.399   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.585  -2.039   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.566  -1.699   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.453  -2.153   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.907  -1.133   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -2.266  -0.566   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.039  -0.001   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.566  -0.566   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.113   0.793   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.018   2.039   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.452   3.399   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       2.266   2.719   0.000  0.00  0.00           O+0
CONECT    1    2    5    6                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4    9                                                  
CONECT    4    3    5                                                       
CONECT    5    1    4    6                                                  
CONECT    6    1    5    7    9                                             
CONECT    7    6                                                            
CONECT    8    9                                                            
CONECT    9    3    6    8   10                                             
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
MASTER        0    0    0    0    0    0    0    0   13    0   30    0
END

View in JSmol

Synonyms

Value	Source
Norecasantalate	Generator
10,11,12,13-Tetranor-a-santalan-9-Oic acid	HMDB
Eka-nortricyclosantalic acid	HMDB
Nortricycloekasantalic acid	HMDB
2-{2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetate	Generator

Chemical Formula

C₁₁H₁₆O₂

Average Mass

180.2435 Da

Monoisotopic Mass

180.11503 Da

IUPAC Name

2-{2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid

Traditional Name

{2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid

CAS Registry Number

Not Available

SMILES

CC12C3CC(CC13)C2(C)CC(O)=O

InChI Identifier

InChI=1S/C11H16O2/c1-10(5-9(12)13)6-3-7-8(4-6)11(7,10)2/h6-8H,3-5H2,1-2H3,(H,12,13)

InChI Key

LDSSHHGVKDZTIX-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Santalum album	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as bicyclic monoterpenoids. These are monoterpenoids containing exactly 2 rings, which are fused to each other.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Monoterpenoids

Direct Parent

Bicyclic monoterpenoids

Alternative Parents

Not Available

Substituents

Not Available

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.03	ALOGPS
logP	1.57	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	4.71	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.3 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	48.16 m³·mol⁻¹	ChemAxon
Polarizability	19.71 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0036817

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB015764

KNApSAcK ID

C00021848

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

100966488

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
LOTUS database [Link]

Showing NP-Card for {2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid (NP0155150)

MOL for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

3D MOL for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

3D SDF for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

3D-SDF for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

PDB for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

3D PDB for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

SMILES for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

INCHI for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

Structure for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)

3D Structure for NP0155150 ({2,3-dimethyltricyclo[2.2.1.0²,⁶]heptan-3-yl}acetic acid)