NP-MRD: Showing NP-Card for 3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one (NP0154883)

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Record Information

Version

2.0

Created at

2022-09-02 11:51:27 UTC

Updated at

2022-09-02 11:51:27 UTC

NP-MRD ID

NP0154883

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one

Description

Gardnerinin belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain. 3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one is found in Goniothalamus gardneri. 3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one was first documented in 1998 (PMID: 17253238). Based on a literature review very few articles have been published on gardnerinin.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022213512D          

 44 45  0  0  1  0            999 V2000
   16.6943   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4087   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1232   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8377   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5522   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.2666   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9811   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6956   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4100   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1245   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.8390   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.5535   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2679   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2679   -6.4311    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.9824   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.9824   -4.3686    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.6969   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.4113   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.1258   -5.6061    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   28.1258   -6.4311    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   28.9265   -4.3732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.7335   -4.2016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   36.0657  -10.4432    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   34.6932   -9.9164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.5940   -5.5292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
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 36 42  1  0  0  0  0
 42 43  2  0  0  0  0
 24 44  1  0  0  0  0
 21 44  1  0  0  0  0
M  END

     RDKit          3D

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 38 41  1  0
 41 42  1  0
 42 43  2  0
 24 44  1  0
 44 21  1  0
 42 36  1  0
  1 45  1  0
  1 46  1  0
  1 47  1  0
  2 48  1  0
  2 49  1  0
  3 50  1  0
  3 51  1  0
  4 52  1  0
  4 53  1  0
  5 54  1  0
  5 55  1  0
  6 56  1  0
  6 57  1  0
  7 58  1  0
  7 59  1  0
  8 60  1  0
  8 61  1  0
  9 62  1  0
  9 63  1  0
 10 64  1  0
 10 65  1  0
 11 66  1  0
 11 67  1  0
 12 68  1  0
 12 69  1  0
 13 70  1  1
 14 71  1  0
 15 72  1  6
 16 73  1  0
 17 74  1  0
 17 75  1  0
 18 76  1  0
 18 77  1  0
 19 78  1  1
 20 79  1  0
 21 80  1  6
 22 81  1  0
 22 82  1  0
 23 83  1  0
 23 84  1  0
 24 85  1  1
 25 86  1  0
 25 87  1  0
 26 88  1  6
 27 89  1  0
 28 90  1  0
 28 91  1  0
 29 92  1  0
 29 93  1  0
 30 94  1  0
 30 95  1  0
 31 96  1  0
 31 97  1  0
 32 98  1  0
 32 99  1  0
 33100  1  6
 34101  1  0
 35102  1  0
 35103  1  0
 37104  1  0
 39105  1  0
 39106  1  0
 39107  1  0
 40108  1  0
M  END


  Mrv1652309022213512D          

 44 45  0  0  1  0            999 V2000
   16.6943   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.4087   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.1232   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.8377   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5522   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.2666   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.9811   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.6956   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.4100   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.1245   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.8390   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.5535   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2679   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.2679   -6.4311    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.9824   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.9824   -4.3686    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   26.6969   -5.6061    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.4113   -5.1936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.1258   -5.6061    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   28.1258   -6.4311    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   28.8403   -5.1936    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   28.9265   -4.3732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.7335   -4.2016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.1460   -4.9161    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   30.9665   -5.0023    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.3020   -5.7560    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   30.8171   -6.4235    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   32.1225   -5.8423    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.4581   -6.5959    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.2785   -6.6822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   33.6141   -7.4358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.4346   -7.5221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.7701   -8.2758    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   34.2852   -8.9432    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   35.5906   -8.3620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   35.9262   -9.1157    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   36.7331   -9.2872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   36.8194  -10.1077    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   37.6264   -9.9361    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   37.0743  -10.8923    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   36.0657  -10.4432    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   35.5137   -9.8301    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   34.6932   -9.9164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   29.5940   -5.5292    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  1  0  0  0
 21 19  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  1  1  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  6  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
 38 41  1  0  0  0  0
 41 42  1  0  0  0  0
 36 42  1  0  0  0  0
 42 43  2  0  0  0  0
 24 44  1  0  0  0  0
 21 44  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0154883

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCC(O)C(O)CC[C@H](O)[C@@H]1CC[C@@H](C[C@H](O)CCCCC[C@@H](O)CC2=CC(C)(O)OC2=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C35H64O9/c1-3-4-5-6-7-8-9-10-11-15-18-30(38)31(39)20-21-32(40)33-22-19-29(43-33)24-28(37)17-14-12-13-16-27(36)23-26-25-35(2,42)44-34(26)41/h25,27-33,36-40,42H,3-24H2,1-2H3/t27-,28-,29+,30?,31?,32+,33+,35?/m1/s1

> <INCHI_KEY>
MHJXLYRROIIMQN-FUWXCHBMSA-N

> <FORMULA>
C35H64O9

> <MOLECULAR_WEIGHT>
628.888

> <EXACT_MASS>
628.455033641

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
108

> <JCHEM_AVERAGE_POLARIZABILITY>
76.22036853967575

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3-[(2R,8R)-2,8-dihydroxy-9-[(2S,5S)-5-[(1S)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methyl-2,5-dihydrofuran-2-one

> <ALOGPS_LOGP>
4.60

> <JCHEM_LOGP>
5.714005864333332

> <ALOGPS_LOGS>
-5.12

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.700397958023395

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.714582867526467

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7210596544236365

> <JCHEM_POLAR_SURFACE_AREA>
156.91

> <JCHEM_REFRACTIVITY>
172.602

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
4.77e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-[(2R,8R)-2,8-dihydroxy-9-[(2S,5S)-5-[(1S)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      31.163 -10.465   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      32.496  -9.695   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      33.830 -10.465   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      35.164  -9.695   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      36.497 -10.465   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      37.831  -9.695   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      39.165 -10.465   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      40.498  -9.695   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      41.832 -10.465   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      43.166  -9.695   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      44.499 -10.465   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      45.833  -9.695   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      47.167 -10.465   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      47.167 -12.005   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      48.500  -9.695   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      48.500  -8.155   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      49.834 -10.465   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      51.168  -9.695   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      52.502 -10.465   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      52.502 -12.005   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      53.835  -9.695   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      53.996  -8.163   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      55.503  -7.843   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      56.273  -9.177   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      57.804  -9.338   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      58.430 -10.745   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      57.525 -11.990   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      59.962 -10.906   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      60.588 -12.312   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      62.120 -12.473   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      62.746 -13.880   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      64.278 -14.041   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      64.904 -15.448   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      63.999 -16.694   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      66.436 -15.609   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      67.062 -17.016   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      68.569 -17.336   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      68.730 -18.868   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      70.236 -18.547   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      69.205 -20.332   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0      67.323 -19.494   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      66.292 -18.350   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      64.761 -18.511   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0      55.242 -10.321   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   44                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   44                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35   37   42                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39   40   41                                             
CONECT   39   38                                                            
CONECT   40   38                                                            
CONECT   41   38   42                                                       
CONECT   42   41   36   43                                                  
CONECT   43   42                                                            
CONECT   44   24   21                                                       
MASTER        0    0    0    0    0    0    0    0   44    0   90    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₅H₆₄O₉

Average Mass

628.8880 Da

Monoisotopic Mass

628.45503 Da

IUPAC Name

3-[(2R,8R)-2,8-dihydroxy-9-[(2S,5S)-5-[(1S)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methyl-2,5-dihydrofuran-2-one

Traditional Name

3-[(2R,8R)-2,8-dihydroxy-9-[(2S,5S)-5-[(1S)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCC(O)C(O)CC[C@H](O)[C@@H]1CC[C@@H](C[C@H](O)CCCCC[C@@H](O)CC2=CC(C)(O)OC2=O)O1

InChI Identifier

InChI=1S/C35H64O9/c1-3-4-5-6-7-8-9-10-11-15-18-30(38)31(39)20-21-32(40)33-22-19-29(43-33)24-28(37)17-14-12-13-16-27(36)23-26-25-35(2,42)44-34(26)41/h25,27-33,36-40,42H,3-24H2,1-2H3/t27-,28-,29+,30?,31?,32+,33+,35?/m1/s1

InChI Key

MHJXLYRROIIMQN-FUWXCHBMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Goniothalamus gardneri	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohols

Direct Parent

Annonaceous acetogenins

Alternative Parents

Substituents

Annonaceae acetogenin skeleton
Long chain fatty alcohol
2-furanone
Dihydrofuran
Oxolane
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Secondary alcohol
Carboxylic acid ester
Hemiacetal
Lactone
Oxacycle
Organoheterocyclic compound
Carboxylic acid derivative
Polyol
Dialkyl ether
Ether
Monocarboxylic acid or derivatives
Carbonyl group
Alcohol
Organic oxide
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.6	ALOGPS
logP	5.71	ChemAxon
logS	-5.1	ALOGPS
pKa (Strongest Acidic)	11.71	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	6	ChemAxon
Polar Surface Area	156.91 Å²	ChemAxon
Rotatable Bond Count	26	ChemAxon
Refractivity	172.6 m³·mol⁻¹	ChemAxon
Polarizability	76.22 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101942852

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Chen Y, Chen RR, Jiang Z, Yu DQ: A new epimeric pair of mono-THF annonaceous acetogenins from Goniothalamus gardneri. Planta Med. 1998 Apr;64(3):242-5. doi: 10.1055/s-2006-957418. [PubMed:17253238 ]
LOTUS database [Link]

Showing NP-Card for 3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one (NP0154883)

MOL for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

3D MOL for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

3D SDF for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

3D-SDF for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

PDB for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

3D PDB for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

SMILES for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

INCHI for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

Structure for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)

3D Structure for NP0154883 (3-[(2r,8r)-2,8-dihydroxy-9-[(2s,5s)-5-[(1s)-1,4,5-trihydroxyheptadecyl]oxolan-2-yl]nonyl]-5-hydroxy-5-methylfuran-2-one)