NP-MRD: Showing NP-Card for (3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione (NP0154693)

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Record Information

Version

1.0

Created at

2022-09-02 11:38:34 UTC

Updated at

2022-09-02 11:38:34 UTC

NP-MRD ID

NP0154693

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione

Description

(3Z,5R)-3-{[(1aS,2S,3S,3aR,4S,7aR,7bR)-2-[(2E)-but-2-en-2-yl]-1a,4-dimethyl-decahydronaphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-1-methyl-5-(propan-2-yl)pyrrolidine-2,4-dione belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. (3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione is found in Trichobotrys effusa. Based on a literature review very few articles have been published on (3Z,5R)-3-{[(1aS,2S,3S,3aR,4S,7aR,7bR)-2-[(2E)-but-2-en-2-yl]-1a,4-dimethyl-decahydronaphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-1-methyl-5-(propan-2-yl)pyrrolidine-2,4-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022213382D          

 30 33  0  0  1  0            999 V2000
    0.8517    1.6355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3435    0.9730    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1630    1.0677    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9832    1.8729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6548    0.4052    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4743    0.4999    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.8021    1.2569    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6217    1.3516    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3104    1.9194    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4854    1.9109    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6983    2.1578    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2225    2.6929    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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    0.8279    2.3815    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2555    3.7450    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8849    3.1846    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
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    3.5573    2.7066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.9660   -0.1626    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.7856   -0.0679    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309022213382D          

 30 33  0  0  1  0            999 V2000
    0.8517    1.6355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
> <DATABASE_ID>
NP0154693

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C(/C)[C@@H]1[C@H]([C@@H]2[C@@H](C)CCC[C@H]2[C@H]2O[C@@]12C)C(\O)=C1/C(=O)[C@@H](C(C)C)N(C)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C25H37NO4/c1-8-13(4)19-17(16-14(5)10-9-11-15(16)23-25(19,6)30-23)21(27)18-22(28)20(12(2)3)26(7)24(18)29/h8,12,14-17,19-20,23,27H,9-11H2,1-7H3/b13-8+,21-18-/t14-,15+,16+,17-,19+,20+,23+,25-/m0/s1

> <INCHI_KEY>
QVIXMXLKXIWYKD-VNBVSDCXSA-N

> <FORMULA>
C25H37NO4

> <MOLECULAR_WEIGHT>
415.574

> <EXACT_MASS>
415.272258675

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
67

> <JCHEM_AVERAGE_POLARIZABILITY>
46.882488981020046

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3Z,5R)-3-{[(1aS,2S,3S,3aR,4S,7aR,7bR)-2-[(2E)-but-2-en-2-yl]-1a,4-dimethyl-decahydronaphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-1-methyl-5-(propan-2-yl)pyrrolidine-2,4-dione

> <ALOGPS_LOGP>
3.41

> <JCHEM_LOGP>
3.967846451333334

> <ALOGPS_LOGS>
-4.05

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
14.421985655224809

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.877804016385875

> <JCHEM_PKA_STRONGEST_BASIC>
-0.5348192005520517

> <JCHEM_POLAR_SURFACE_AREA>
70.14

> <JCHEM_REFRACTIVITY>
118.45589999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.69e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3Z,5R)-3-{[(1aS,2S,3S,3aR,4S,7aR,7bR)-2-[(2E)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2H-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       1.590   3.053   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.508   1.816   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.038   1.993   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.702   3.496   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.956   0.756   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.485   0.933   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.097   2.346   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       8.627   2.523   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       6.179   3.583   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.639   3.567   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.170   4.028   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.149   5.027   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.679   5.488   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.545   4.445   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.344   6.991   0.000  0.00  0.00           C+0
HETATM   16  N   UNK     0       5.385   5.945   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0       5.369   7.485   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.640   5.052   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.100   5.543   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       7.403  -0.303   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.933  -0.127   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.545   1.286   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.851  -1.363   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.239  -2.777   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.709  -2.953   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.791  -1.717   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.262  -1.893   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       3.732  -2.070   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       4.344  -0.657   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.930  -0.045   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   29                                                  
CONECT    6    5    7   20                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   18                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   16                                                  
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13                                                            
CONECT   16   12   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16    9   19                                                  
CONECT   19   18                                                            
CONECT   20    6   21   26                                                  
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   20   27                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27   29                                                       
CONECT   29   28    5   27   30                                             
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   66    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₅H₃₇NO₄

Average Mass

415.5740 Da

Monoisotopic Mass

415.27226 Da

IUPAC Name

(3Z,5R)-3-{[(1aS,2S,3S,3aR,4S,7aR,7bR)-2-[(2E)-but-2-en-2-yl]-1a,4-dimethyl-decahydronaphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-1-methyl-5-(propan-2-yl)pyrrolidine-2,4-dione

Traditional Name

(3Z,5R)-3-{[(1aS,2S,3S,3aR,4S,7aR,7bR)-2-[(2E)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2H-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione

CAS Registry Number

Not Available

SMILES

C\C=C(/C)[C@@H]1[C@H]([C@@H]2[C@@H](C)CCC[C@H]2[C@H]2O[C@@]12C)C(\O)=C1/C(=O)[C@@H](C(C)C)N(C)C1=O

InChI Identifier

InChI=1S/C25H37NO4/c1-8-13(4)19-17(16-14(5)10-9-11-15(16)23-25(19,6)30-23)21(27)18-22(28)20(12(2)3)26(7)24(18)29/h8,12,14-17,19-20,23,27H,9-11H2,1-7H3/b13-8+,21-18-/t14-,15+,16+,17-,19+,20+,23+,25-/m0/s1

InChI Key

QVIXMXLKXIWYKD-VNBVSDCXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Trichobotrys effusa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Sesquiterpenoid
Oxepane
N-alkylpyrrolidine
3-pyrrolidone
2-pyrrolidone
Pyrrolidone
Vinylogous acid
Tertiary carboxylic acid amide
Pyrrolidine
Cyclic ketone
Lactam
Ketone
Carboxamide group
Oxacycle
Azacycle
Organoheterocyclic compound
Ether
Oxirane
Enol
Dialkyl ether
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.41	ALOGPS
logP	3.97	ChemAxon
logS	-4	ALOGPS
pKa (Strongest Acidic)	4.88	ChemAxon
pKa (Strongest Basic)	-0.53	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	70.14 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	118.46 m³·mol⁻¹	ChemAxon
Polarizability	46.88 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

78440838

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

139584168

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione (NP0154693)

MOL for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

3D MOL for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

3D SDF for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

3D-SDF for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

PDB for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

3D PDB for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

SMILES for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

INCHI for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

Structure for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)

3D Structure for NP0154693 ((3z,5r)-3-{[(1as,2s,3s,3ar,4s,7ar,7br)-2-[(2e)-but-2-en-2-yl]-1a,4-dimethyl-octahydro-2h-naphtho[1,2-b]oxiren-3-yl](hydroxy)methylidene}-5-isopropyl-1-methylpyrrolidine-2,4-dione)