NP-MRD: Showing NP-Card for 17-hydroxymargaric acid (NP0154383)

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Record Information

Version

2.0

Created at

2022-09-02 11:11:07 UTC

Updated at

2022-09-02 11:11:08 UTC

NP-MRD ID

NP0154383

Secondary Accession Numbers

None

Natural Product Identification

Common Name

17-hydroxymargaric acid

Description

17-Hydroxymargaric acid, also known as 17-hydroxy-heptadecanoate or omega-hydroxymargarate, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. 17-hydroxymargaric acid is found in Pinus radiata. 17-Hydroxymargaric acid is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 54 53  0  0  0  0  0  0  0  0999 V2000
    5.6927   -0.3838    1.6810 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6970   -0.0388    1.0819 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8182    0.2581    1.9065 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8705    0.0984   -0.3432 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7740   -0.0623   -1.2981 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6103    0.8232   -1.3085 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6550    0.8827   -0.1939 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8976   -0.3948    0.0955 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0747   -0.7778   -1.1262 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2951   -2.0280   -0.8962 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3221   -1.9744    0.2356 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6897   -0.8695   -0.0511 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6962   -0.7654    1.0467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6765    0.3387    0.7496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3989    0.0563   -0.5240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3880    1.1424   -0.8405 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4072    1.2721    0.2413 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1538   -0.0355    0.4103 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1759    0.2339    1.5305 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0194    1.2734    1.1197 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.6741    0.7535    2.7695 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6559   -0.7049   -0.6242 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4614    1.0410   -0.6037 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2362    0.0230   -2.3481 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4633   -1.1712   -1.3215 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9245    1.8954   -1.5767 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0122    0.5535   -2.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8050    1.5952   -0.5356 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9830    1.3716    0.7365 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5750   -1.1992    0.3712 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1667   -0.1536    0.9082 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7781   -1.0060   -1.9752 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4094    0.0380   -1.3979 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6969   -2.2107   -1.8324 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9455   -2.9361   -0.8081 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8143   -1.7488    1.2067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1843   -2.9521    0.3530 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1445   -1.1195   -1.0297 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1619    0.0815   -0.1340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2428   -0.5978    2.0379 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3028   -1.7166    1.0441 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3959    0.4692    1.6013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0745    1.2895    0.6548 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9288   -0.9176   -0.4555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7058    0.0318   -1.4064 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7999    2.0912   -0.9673 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8511    0.9011   -1.8251 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1484    2.0915    0.0149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9999    1.5524    1.2288 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6552   -0.3612   -0.5127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4473   -0.7992    0.8183 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5752    0.5540    2.4069 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7201   -0.7043    1.7242 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.3646    1.0737    0.2062 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0
 19 18  1  0
 18 17  1  0
 17 16  1  0
 16 15  1  0
 15 14  1  0
 14 13  1  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  2  1  0
  2  3  1  0
  2  1  2  0
 20 54  1  0
 19 52  1  0
 19 53  1  0
 18 50  1  0
 18 51  1  0
 17 48  1  0
 17 49  1  0
 16 46  1  0
 16 47  1  0
 15 44  1  0
 15 45  1  0
 14 42  1  0
 14 43  1  0
 13 40  1  0
 13 41  1  0
 12 38  1  0
 12 39  1  0
 11 36  1  0
 11 37  1  0
 10 34  1  0
 10 35  1  0
  9 32  1  0
  9 33  1  0
  8 30  1  0
  8 31  1  0
  7 28  1  0
  7 29  1  0
  6 26  1  0
  6 27  1  0
  5 24  1  0
  5 25  1  0
  4 22  1  0
  4 23  1  0
  3 21  1  0
M  END


  Mrv1533004171504112D          

 20 19  0  0  0  0            999 V2000
    9.1855    6.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.9000    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6145    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3289    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0434    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7579    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4724    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1868    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9013    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6158    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3302    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0447    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.7592    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4737    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.1881    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.9026    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.6171    6.1283    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.3315    5.7158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.0460    6.1283    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   21.3315    4.8908    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0154383

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCCCCCCCCCCCCCCCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C17H34O3/c18-16-14-12-10-8-6-4-2-1-3-5-7-9-11-13-15-17(19)20/h18H,1-16H2,(H,19,20)

> <INCHI_KEY>
JHRQMZPLCYCFPI-UHFFFAOYSA-N

> <FORMULA>
C17H34O3

> <MOLECULAR_WEIGHT>
286.456

> <EXACT_MASS>
286.250794955

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
37.53321818307609

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
17-hydroxyheptadecanoic acid

> <ALOGPS_LOGP>
6.29

> <JCHEM_LOGP>
5.2644728259999996

> <ALOGPS_LOGS>
-5.21

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
16.84394282199214

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.952019704603348

> <JCHEM_PKA_STRONGEST_BASIC>
-1.9922594590354228

> <JCHEM_POLAR_SURFACE_AREA>
57.53

> <JCHEM_REFRACTIVITY>
83.61329999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.76e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
17-hydroxyheptadecanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  O   UNK     0      17.146  11.439   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      18.480  10.669   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      19.814  11.439   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      21.147  10.669   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      22.481  11.439   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      23.815  10.669   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      25.148  11.439   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      26.482  10.669   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      27.816  11.439   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      29.149  10.669   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      30.483  11.439   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      31.817  10.669   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      33.150  11.439   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      34.484  10.669   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      35.818  11.439   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      37.152  10.669   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      38.485  11.439   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      39.819  10.669   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      41.153  11.439   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0      39.819   9.129   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   38    0
END

View in JSmol

Synonyms

Value	Source
17-Hydroxy-heptadecanoic acid	ChEBI
17-Hydroxyheptadecanoic acid	ChEBI
Omega-hydroxyheptadecanoic acid	ChEBI
Omega-hydroxymargaric acid	ChEBI
17-Hydroxy-heptadecanoate	Generator
17-Hydroxyheptadecanoate	Generator
Omega-hydroxyheptadecanoate	Generator
Omega-hydroxymargarate	Generator
17-Hydroxymargarate	Generator

Chemical Formula

C₁₇H₃₄O₃

Average Mass

286.4560 Da

Monoisotopic Mass

286.25079 Da

IUPAC Name

17-hydroxyheptadecanoic acid

Traditional Name

17-hydroxyheptadecanoic acid

CAS Registry Number

Not Available

SMILES

OCCCCCCCCCCCCCCCCC(O)=O

InChI Identifier

InChI=1S/C17H34O3/c18-16-14-12-10-8-6-4-2-1-3-5-7-9-11-13-15-17(19)20/h18H,1-16H2,(H,19,20)

InChI Key

JHRQMZPLCYCFPI-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pinus radiata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acids and conjugates

Direct Parent

Long-chain fatty acids

Alternative Parents

Substituents

Long-chain fatty acid
Hydroxy fatty acid
Straight chain fatty acid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Primary alcohol
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

long-chain fatty acid (CHEBI:79177 )
omega-hydroxy fatty acid (CHEBI:79177 )
Hydroxy fatty acids (LMFA01050053 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.29	ALOGPS
logP	5.26	ChemAxon
logS	-5.2	ALOGPS
pKa (Strongest Acidic)	4.95	ChemAxon
pKa (Strongest Basic)	-2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	57.53 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	83.61 m³·mol⁻¹	ChemAxon
Polarizability	37.53 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

4308451

PDB ID

Not Available

ChEBI ID

79177

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 17-hydroxymargaric acid (NP0154383)

MOL for NP0154383 (17-hydroxymargaric acid)

3D MOL for NP0154383 (17-hydroxymargaric acid)

3D SDF for NP0154383 (17-hydroxymargaric acid)

3D-SDF for NP0154383 (17-hydroxymargaric acid)

PDB for NP0154383 (17-hydroxymargaric acid)

3D PDB for NP0154383 (17-hydroxymargaric acid)

SMILES for NP0154383 (17-hydroxymargaric acid)

INCHI for NP0154383 (17-hydroxymargaric acid)

Structure for NP0154383 (17-hydroxymargaric acid)

3D Structure for NP0154383 (17-hydroxymargaric acid)