NP-MRD: Showing NP-Card for 7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde (NP0154319)

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Record Information

Version

2.0

Created at

2022-09-02 11:06:36 UTC

Updated at

2022-09-02 11:06:36 UTC

NP-MRD ID

NP0154319

Secondary Accession Numbers

None

Natural Product Identification

Common Name

7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde

Description

5-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-14-(1-hydroxy-5-methylhex-4-en-1-yl)-10,11-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecane-2-carbaldehyde belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton. 7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde is found in Gymnema sylvestre and Gynostemma pentaphyllum. Based on a literature review very few articles have been published on 5-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-14-(1-hydroxy-5-methylhex-4-en-1-yl)-10,11-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]Heptadecane-2-carbaldehyde.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022213062D          

 52 57  0  0  1  0            999 V2000
   -3.0459   -1.0035    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2287   -0.8906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9178   -0.1264    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7223   -1.5419    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9051   -1.4291    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3987   -2.0804    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4185   -1.9676    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7294   -1.2034    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9249   -2.6189    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6955   -3.4114    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3784   -3.8744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0297   -3.3680    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2274   -4.1690    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7494   -2.5921    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2812   -1.9614    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0934   -2.1066    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3737   -2.8825    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1858   -3.0277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9055   -2.2518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4373   -1.6211    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7176   -2.3970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5297   -2.5422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8100   -3.3182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6221   -3.4634    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1540   -2.8327    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.8737   -2.0567    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4055   -1.4260    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.1252   -0.6501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6570   -0.0194    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2176   -1.5712    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.7494   -0.9405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4979   -2.3472    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.3100   -2.4924    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.9661   -2.9779    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.2464   -3.7538    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0585   -3.8990    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.5903   -3.2683    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.4024   -3.4135    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.9342   -2.7828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6540   -2.0069    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.6827   -4.1894    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4948   -4.3347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.1509   -4.8202    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.4312   -5.5961    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.3388   -4.6749    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    8.8070   -5.3057    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2782   -3.9489    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4661   -3.8037    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9343   -4.4344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1221   -4.2891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8418   -3.5132    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5309   -4.2774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 25 24  1  6  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  6  0  0  0
 28 29  1  0  0  0  0
 27 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 32 33  1  6  0  0  0
 32 34  1  0  0  0  0
 25 34  1  0  0  0  0
 34 35  1  1  0  0  0
 36 35  1  6  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  6  0  0  0
 39 40  1  0  0  0  0
 38 41  1  0  0  0  0
 41 42  1  1  0  0  0
 41 43  1  0  0  0  0
 43 44  1  6  0  0  0
 43 45  1  0  0  0  0
 36 45  1  0  0  0  0
 45 46  1  1  0  0  0
 23 47  1  0  0  0  0
 47 48  1  0  0  0  0
 18 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 50 51  1  0  0  0  0
 17 51  1  0  0  0  0
 12 51  1  0  0  0  0
 51 52  1  0  0  0  0
M  END

     RDKit          3D

116121  0  0  0  0  0  0  0  0999 V2000
    7.8829   -2.7870   -1.6630 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4124   -2.5665   -1.7025 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5262   -3.7611   -1.5752 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9412   -1.3277   -1.8521 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8095   -0.1848   -1.9773 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6287    1.0227   -1.1549 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7397    1.0556    0.2776 C   0  0  1  0  0  0  0  0  0  0  0  0
    6.5310    2.4544    0.6969 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9938    0.3013    1.2692 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0167   -1.1591    1.3798 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6110   -1.7160    1.2841 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8456   -0.5309    1.8972 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1966   -0.5501    3.3372 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5015    0.5839    1.1065 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.0397    1.8737    1.6466 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5325    1.8273    1.9459 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9430    0.7612    1.1109 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4568    0.8829    0.8597 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3530    0.8348    2.1044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3219    0.1463    2.2999 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1200    2.1948    0.1906 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5813    2.0334   -1.1424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8049    1.1485   -1.0149 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.7448    1.6866   -0.1567 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9421    2.0092   -0.8405 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.9793    3.4029   -0.8052 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1145    3.9440   -1.3450 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.9493    5.4620   -1.3143 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8125    5.7493   -2.0833 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2364    3.6256   -0.3466 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.4164    4.2247   -0.7116 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4150    2.1470   -0.3822 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.3587    1.7978    0.5604 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1196    1.3618   -0.2170 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4016    0.1012   -0.7464 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3406   -0.9192    0.1639 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4087   -1.8447   -0.2224 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8743   -2.9214   -0.9318 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.8170   -3.4900   -1.8886 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7206   -3.8919   -1.1398 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0921   -2.6418   -1.7659 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.4381   -3.8611   -2.3929 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2296   -2.2141   -0.8802 C   0  0  2  0  0  0  0  0  0  0  0  0
   -8.1267   -1.3830   -1.5406 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6677   -1.6186    0.3714 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.4491   -2.6531    1.2854 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3380   -0.1851   -0.5423 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1133   -0.1976   -0.1210 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.5402   -1.5795    0.2582 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0115   -1.5887    0.5569 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3670   -0.5680    1.6237 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6851   -1.0085    2.8822 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3572   -2.2559   -0.8363 H   0  0  0  0  0  0  0  0  0  0  0  0
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    5.9590   -4.5995   -2.1534 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.8543   -1.1770   -1.8831 H   0  0  0  0  0  0  0  0  0  0  0  0
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    7.9023   -0.5329   -1.8177 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4501    1.7534   -1.5537 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.7879   -1.7066    0.8662 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2838   -1.3732    2.4951 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5316   -2.6032    1.9799 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2614   -1.9539    0.2922 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4347   -0.1753    4.0444 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3706   -1.6177    3.6794 H   0  0  0  0  0  0  0  0  0  0  0  0
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    4.2524    2.6717    0.9029 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5623    2.1186    2.5792 H   0  0  0  0  0  0  0  0  0  0  0  0
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    1.0139    2.8133   -0.0166 H   0  0  0  0  0  0  0  0  0  0  0  0
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 39 99  1  0
 40100  1  0
 41101  1  6
 42102  1  0
 43103  1  1
 44104  1  0
 45105  1  1
 46106  1  0
M  END


  Mrv1652309022213062D          

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    8.7494   -0.9405    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4979   -2.3472    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    9.3100   -2.4924    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.9342   -2.7828    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.6827   -4.1894    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   11.4948   -4.3347    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.1509   -4.8202    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    3.1221   -4.2891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
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  9 14  1  0  0  0  0
 14 15  1  0  0  0  0
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 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
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 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  6  0  0  0
 28 29  1  0  0  0  0
 27 30  1  0  0  0  0
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 30 32  1  0  0  0  0
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 32 34  1  0  0  0  0
 25 34  1  0  0  0  0
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 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
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 38 41  1  0  0  0  0
 41 42  1  1  0  0  0
 41 43  1  0  0  0  0
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 48 49  1  0  0  0  0
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 50 51  1  0  0  0  0
 17 51  1  0  0  0  0
 12 51  1  0  0  0  0
 51 52  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0154319

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=CCCC(O)C1CCC2(C)C1CCC1C2(C)CCC2CC(CCC12C=O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C39H64O13/c1-20(2)6-5-7-25(43)23-12-14-37(3)24(23)8-9-28-38(37,4)13-10-21-16-22(11-15-39(21,28)19-42)49-36-34(32(47)30(45)27(18-41)51-36)52-35-33(48)31(46)29(44)26(17-40)50-35/h6,19,21-36,40-41,43-48H,5,7-18H2,1-4H3/t21?,22?,23?,24?,25?,26-,27-,28?,29-,30-,31+,32+,33-,34-,35+,36-,37?,38?,39?/m1/s1

> <INCHI_KEY>
GVBDPCPLRGCHQH-QLRGAEDESA-N

> <FORMULA>
C39H64O13

> <MOLECULAR_WEIGHT>
740.928

> <EXACT_MASS>
740.434692121

> <JCHEM_ACCEPTOR_COUNT>
13

> <JCHEM_ATOM_COUNT>
116

> <JCHEM_AVERAGE_POLARIZABILITY>
82.77448621475989

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-14-(1-hydroxy-5-methylhex-4-en-1-yl)-10,11-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecane-2-carbaldehyde

> <ALOGPS_LOGP>
0.49

> <JCHEM_LOGP>
1.3085573126666674

> <ALOGPS_LOGS>
-3.57

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.700613227966592

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.08985142694088

> <JCHEM_PKA_STRONGEST_BASIC>
-0.7378118706642302

> <JCHEM_POLAR_SURFACE_AREA>
215.82999999999998

> <JCHEM_REFRACTIVITY>
187.75390000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
11

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.01e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-{[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-14-(1-hydroxy-5-methylhex-4-en-1-yl)-10,11-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecane-2-carbaldehyde

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      -5.686  -1.873   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.160  -1.662   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.580  -0.236   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -3.215  -2.878   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.690  -2.668   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.744  -3.883   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.781  -3.673   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       1.362  -2.246   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       1.726  -4.889   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.298  -6.368   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.573  -7.232   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.789  -6.287   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.158  -7.782   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.266  -4.839   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.258  -3.661   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.774  -3.932   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.297  -5.381   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.813  -5.652   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.290  -4.203   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       8.283  -3.026   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.806  -4.474   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      10.322  -4.746   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.845  -6.194   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      12.361  -6.465   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      13.354  -5.288   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      12.831  -3.839   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      13.824  -2.662   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      13.300  -1.214   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      14.293  -0.036   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      15.340  -2.933   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      16.332  -1.756   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      15.863  -4.381   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0      17.379  -4.652   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0      14.870  -5.559   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      15.393  -7.007   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      16.909  -7.278   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0      17.902  -6.101   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      19.418  -6.372   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      20.411  -5.195   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      19.887  -3.746   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      19.941  -7.820   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      21.457  -8.091   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      18.948  -8.998   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      19.472 -10.446   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      17.432  -8.727   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      16.440  -9.904   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0       9.853  -7.371   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0       8.337  -7.100   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0       7.344  -8.277   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0       5.828  -8.006   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0       5.305  -6.558   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0       4.724  -7.984   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   51                                             
CONECT   13   12                                                            
CONECT   14   12    9   15                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   51                                                  
CONECT   18   17   19   21   48                                             
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   47                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   34                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   30                                                  
CONECT   28   27   29                                                       
CONECT   29   28                                                            
CONECT   30   27   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   25   35                                                  
CONECT   35   34   36                                                       
CONECT   36   35   37   45                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39   41                                                  
CONECT   39   38   40                                                       
CONECT   40   39                                                            
CONECT   41   38   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43   36   46                                                  
CONECT   46   45                                                            
CONECT   47   23   48                                                       
CONECT   48   47   18   49                                                  
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   17   12   52                                             
CONECT   52   51                                                            
MASTER        0    0    0    0    0    0    0    0   52    0  114    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₉H₆₄O₁₃

Average Mass

740.9280 Da

Monoisotopic Mass

740.43469 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C)=CCCC(O)C1CCC2(C)C1CCC1C2(C)CCC2CC(CCC12C=O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C39H64O13/c1-20(2)6-5-7-25(43)23-12-14-37(3)24(23)8-9-28-38(37,4)13-10-21-16-22(11-15-39(21,28)19-42)49-36-34(32(47)30(45)27(18-41)51-36)52-35-33(48)31(46)29(44)26(17-40)50-35/h6,19,21-36,40-41,43-48H,5,7-18H2,1-4H3/t21?,22?,23?,24?,25?,26-,27-,28?,29-,30-,31+,32+,33-,34-,35+,36-,37?,38?,39?/m1/s1

InChI Key

GVBDPCPLRGCHQH-QLRGAEDESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gymnema sylvestre	LOTUS Database	35616633
Gynostemma pentaphyllum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as steroidal glycosides. These are sterol lipids containing a carbohydrate moiety glycosidically linked to the steroid skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Steroidal glycosides

Alternative Parents

Substituents

Diterpene glycoside
Steroidal glycoside
20-hydroxysteroid
Diterpenoid
19-oxosteroid
Oxosteroid
Hydroxysteroid
Terpene glycoside
Fatty acyl glycoside
Fatty acyl glycoside of mono- or disaccharide
Alkyl glycoside
Disaccharide
Glycosyl compound
O-glycosyl compound
Fatty alcohol
Fatty acyl
Oxane
Secondary alcohol
Polyol
Acetal
Organoheterocyclic compound
Oxacycle
Primary alcohol
Organic oxide
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Aldehyde
Alcohol
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.49	ALOGPS
logP	1.31	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	12.09	ChemAxon
pKa (Strongest Basic)	-0.74	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	13	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	215.83 Å²	ChemAxon
Rotatable Bond Count	11	ChemAxon
Refractivity	187.75 m³·mol⁻¹	ChemAxon
Polarizability	82.77 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4476610

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5317936

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde (NP0154319)

MOL for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

3D MOL for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

3D SDF for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

3D-SDF for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

PDB for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

3D PDB for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

SMILES for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

INCHI for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

Structure for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)

3D Structure for NP0154319 (7-{[(2r,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-1-(1-hydroxy-5-methylhex-4-en-1-yl)-3a,3b-dimethyl-tetradecahydrocyclopenta[a]phenanthrene-9a-carbaldehyde)