NP-MRD: Showing NP-Card for (1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione (NP0154217)

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Record Information

Version

2.0

Created at

2022-09-02 11:00:02 UTC

Updated at

2022-09-02 11:00:02 UTC

NP-MRD ID

NP0154217

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione

Description

(1R,2S,13R,15R,18S,23S,24S)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]Heptacosa-9,11,16(25),19-tetraene-8,21,26-trione belongs to the class of organic compounds known as naphthopyranones. Naphthopyranones are compounds containing a naphthopyran skeleton where a ring carbon bears a carboxylic acid group. Naphthtopyran is made up of the pyran ring fused to a naphthalene ring system. (1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione is found in Kadsura longipedunculata. Based on a literature review very few articles have been published on (1R,2S,13R,15R,18S,23S,24S)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]Heptacosa-9,11,16(25),19-tetraene-8,21,26-trione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022213002D          

 36 41  0  0  1  0            999 V2000
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M  END

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M  END


  Mrv1652309022213002D          

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   -4.0578   -4.1416    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.4310   -4.8774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5084   -3.4506    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.3322   -3.4953    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7828   -2.8042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6066   -2.8489    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13 14  1  1  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 13 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 22 21  1  6  0  0  0
  6 22  1  0  0  0  0
 11 22  1  0  0  0  0
 17 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 16 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
  7 31  1  0  0  0  0
 31 32  1  6  0  0  0
 31 33  1  0  0  0  0
  4 33  1  0  0  0  0
 33 34  1  1  0  0  0
 34 35  1  0  0  0  0
  2 35  1  0  0  0  0
 35 36  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0154217

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1[C@H]2OC(=O)C(C)=C[C@@H]2CC2=C1C(=O)C[C@]1(C)[C@H]2C[C@@]2(O)C=C3C=CC(=O)OC(C)(C)C3CC[C@@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C30H36O6/c1-15-10-18-11-19-21-13-30(34)12-17-6-9-24(32)36-28(3,4)20(17)7-8-23(30)29(21,5)14-22(31)25(19)16(2)26(18)35-27(15)33/h6,9-10,12,16,18,20-21,23,26,34H,7-8,11,13-14H2,1-5H3/t16-,18+,20?,21-,23-,26+,29+,30-/m0/s1

> <INCHI_KEY>
REUCSCMILGJJCP-CTMSVWNUSA-N

> <FORMULA>
C30H36O6

> <MOLECULAR_WEIGHT>
492.612

> <EXACT_MASS>
492.251188879

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
54.757895702757345

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2S,13R,15R,18S,23S,24S)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0^{2,13}.0^{5,11}.0^{16,25}.0^{18,23}]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione

> <ALOGPS_LOGP>
3.90

> <JCHEM_LOGP>
3.942651425666666

> <ALOGPS_LOGS>
-4.94

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.22080324027515086

> <JCHEM_POLAR_SURFACE_AREA>
89.9

> <JCHEM_REFRACTIVITY>
137.0625

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
5.68e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2S,13R,15R,18S,23S,24S)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0^{2,13}.0^{5,11}.0^{16,25}.0^{18,23}]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0     -10.939  -2.571   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -10.098  -3.861   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -8.560  -3.778   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -7.719  -5.068   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -6.181  -4.984   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.340  -6.274   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -6.037  -7.648   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -5.196  -8.938   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -5.892 -10.311   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -3.658  -8.854   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.961  -7.481   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -1.990  -8.676   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.475  -7.080   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.321  -8.099   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.196  -7.833   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.934  -6.481   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.336  -5.061   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -0.146  -4.643   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -1.397  -5.541   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -1.595  -4.014   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -2.836  -4.992   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -3.803  -6.191   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.074  -3.709   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.590  -3.443   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.744  -4.463   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.164  -3.866   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       4.667  -6.001   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       3.416  -6.899   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.342  -8.129   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       2.964  -8.371   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -7.575  -7.731   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -8.271  -9.105   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -8.416  -6.441   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -9.953  -6.524   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0     -10.795  -5.234   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0     -12.332  -5.318   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   35                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   33                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   22                                                  
CONECT    7    6    8   31                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   13   22                                             
CONECT   12   11                                                            
CONECT   13   11   14   19                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   28                                                  
CONECT   17   16   18   23                                                  
CONECT   18   17   19                                                       
CONECT   19   18   13   20   21                                             
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21    6   11                                                  
CONECT   23   17   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   16   29   30                                             
CONECT   29   28                                                            
CONECT   30   28                                                            
CONECT   31    7   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31    4   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34    2   36                                                  
CONECT   36   35                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   82    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₃₆O₆

Average Mass

492.6120 Da

Monoisotopic Mass

492.25119 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@@H]1[C@H]2OC(=O)C(C)=C[C@@H]2CC2=C1C(=O)C[C@]1(C)[C@H]2C[C@@]2(O)C=C3C=CC(=O)OC(C)(C)C3CC[C@@H]12

InChI Identifier

InChI=1S/C30H36O6/c1-15-10-18-11-19-21-13-30(34)12-17-6-9-24(32)36-28(3,4)20(17)7-8-23(30)29(21,5)14-22(31)25(19)16(2)26(18)35-27(15)33/h6,9-10,12,16,18,20-21,23,26,34H,7-8,11,13-14H2,1-5H3/t16-,18+,20?,21-,23-,26+,29+,30-/m0/s1

InChI Key

REUCSCMILGJJCP-CTMSVWNUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Kadsura longipedunculata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as naphthopyranones. Naphthopyranones are compounds containing a naphthopyran skeleton where a ring carbon bears a carboxylic acid group. Naphthtopyran is made up of the pyran ring fused to a naphthalene ring system.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Naphthopyrans

Sub Class

Naphthopyranones

Direct Parent

Naphthopyranones

Alternative Parents

Substituents

Naphthopyranone
Naphthalene
Cyclohexenone
Pyranone
Dihydropyranone
Pyran
Dicarboxylic acid or derivatives
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tertiary alcohol
Cyclic alcohol
Lactone
Ketone
Carboxylic acid ester
Oxacycle
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.9	ALOGPS
logS	-4.9	ALOGPS

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163185740

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione (NP0154217)

MOL for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

3D MOL for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

3D SDF for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

3D-SDF for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

PDB for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

3D PDB for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

SMILES for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

INCHI for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

Structure for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)

3D Structure for NP0154217 ((1r,2s,13r,15r,18s,23s,24s)-13-hydroxy-1,6,6,20,24-pentamethyl-7,22-dioxahexacyclo[13.12.0.0²,¹³.0⁵,¹¹.0¹⁶,²⁵.0¹⁸,²³]heptacosa-9,11,16(25),19-tetraene-8,21,26-trione)