Np mrd loader

Record Information
Version2.0
Created at2022-09-02 10:25:17 UTC
Updated at2022-09-02 10:25:17 UTC
NP-MRD IDNP0153715
Secondary Accession NumbersNone
Natural Product Identification
Common Namecedrane
DescriptionCedrane, also known as alpha-cedrane, belongs to the class of organic compounds known as cedrane and isocedrane sesquiterpenoids. These are sesquiternoids with a structure based on the cedrane or the isocedrane skeleton. Cedrane is a tricyclic molecules a 3,6,8,8-tetramethyl-1H-3a,7-methano-azulene moiety. Isocedrane is a rearranged cedrane arising from the migration of methyl group moved from the 6-position to the 4-position. cedrane is found in Dysoxylum spectabile. cedrane was first documented in 2016 (PMID: 27316978). Based on a literature review a significant number of articles have been published on cedrane (PMID: 32044582) (PMID: 30698435) (PMID: 28933167) (PMID: 33397108) (PMID: 32189505) (PMID: 31623780).
Structure
Thumb
Synonyms
ValueSource
(1S,2R,5S,7S,8R)-2,6,6,8-Tetramethyltricyclo[5.3.1.0(1,5)]undecaneChEBI
[3R-(3alpha,3Abeta,6alpha,7beta,8aalpha)]-octahydro-3,6,8,8-tetramethyl-1H-3a,7-methanoazuleneChEBI
alpha-CedraneChEBI
[3R-(3a,3Abeta,6a,7b,8aalpha)]-octahydro-3,6,8,8-tetramethyl-1H-3a,7-methanoazuleneGenerator
[3R-(3Α,3abeta,6α,7β,8aalpha)]-octahydro-3,6,8,8-tetramethyl-1H-3a,7-methanoazuleneGenerator
a-CedraneGenerator
Α-cedraneGenerator
Chemical FormulaC15H26
Average Mass206.3730 Da
Monoisotopic Mass206.20345 Da
IUPAC Name(1S,2R,5S,7S,8R)-2,6,6,8-tetramethyltricyclo[5.3.1.0^{1,5}]undecane
Traditional Name(1S,2R,5S,7S,8R)-2,6,6,8-tetramethyltricyclo[5.3.1.0^{1,5}]undecane
CAS Registry NumberNot Available
SMILES
C[C@@H]1CC[C@H]2C(C)(C)[C@H]3C[C@@]12CC[C@H]3C
InChI Identifier
InChI=1S/C15H26/c1-10-7-8-15-9-12(10)14(3,4)13(15)6-5-11(15)2/h10-13H,5-9H2,1-4H3/t10-,11-,12+,13+,15+/m1/s1
InChI KeyJJTQQGNEXQKQRF-BIGJJFBESA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Dysoxylum spectabileLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cedrane and isocedrane sesquiterpenoids. These are sesquiternoids with a structure based on the cedrane or the isocedrane skeleton. Cedrane is a tricyclic molecules a 3,6,8,8-tetramethyl-1H-3a,7-methano-azulene moiety. Isocedrane is a rearranged cedrane arising from the migration of methyl group moved from the 6-position to the 4-position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentCedrane and isocedrane sesquiterpenoids
Alternative Parents
Substituents
  • Cedrane sesquiterpenoid
  • Polycyclic hydrocarbon
  • Saturated hydrocarbon
  • Hydrocarbon
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.98ALOGPS
logP4.51ChemAxon
logS-6ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity64.84 m³·mol⁻¹ChemAxon
Polarizability26.32 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID7827625
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9548702
PDB IDNot Available
ChEBI ID36530
Good Scents IDNot Available
References
General References
  1. Liu YL, Li WR, Wang XJ, Wang RB, Li M, Zhang JP, Yong JY, Bao XQ, Zhang D, Ma SG: Highly oxidized sesquiterpenes from the fruits of Illicium lanceolatum A. C. Smith. Phytochemistry. 2020 Apr;172:112281. doi: 10.1016/j.phytochem.2020.112281. Epub 2020 Feb 7. [PubMed:32044582 ]
  2. Hung K, Condakes ML, Novaes LFT, Harwood SJ, Morikawa T, Yang Z, Maimone TJ: Development of a Terpene Feedstock-Based Oxidative Synthetic Approach to the Illicium Sesquiterpenes. J Am Chem Soc. 2019 Feb 20;141(7):3083-3099. doi: 10.1021/jacs.8b12247. Epub 2019 Feb 11. [PubMed:30698435 ]
  3. Yang Q, Ma W, Wang G, Bao W, Dong X, Liang X, Zhu L, Lee CS: Tunable Cyclization Strategy for the Synthesis of Zizaene-, allo-Cedrane-, seco-Kaurane-, and seco-Atesane-Type Skeletons. Org Lett. 2017 Oct 6;19(19):5324-5327. doi: 10.1021/acs.orglett.7b02610. Epub 2017 Sep 21. [PubMed:28933167 ]
  4. Yong JY, Li WR, Wang XJ, Su GZ, Li M, Zhang JP, Jia HL, Li YH, Wang RB, Gan M, Ma SG: Illihenin A: An Antiviral Sesquiterpenoid with a Cage-like Tricyclo[6.2.2.0(1,5)]dodecane Skeleton from Illicium henryi. J Org Chem. 2021 Jan 15;86(2):2017-2022. doi: 10.1021/acs.joc.0c02727. Epub 2021 Jan 4. [PubMed:33397108 ]
  5. Tong J, Xia T, Wang B: Total Synthesis of (+/-)-11-O-Debenzoyltashironin via Palladium-Catalyzed 5-endo Ene-yne Cyclization Enabled trans-5-6 Ring Fusion. Org Lett. 2020 Apr 3;22(7):2730-2734. doi: 10.1021/acs.orglett.0c00689. Epub 2020 Mar 19. [PubMed:32189505 ]
  6. Ma LT, Lee YR, Liu PL, Cheng YT, Shiu TF, Tsao NW, Wang SY, Chu FH: Phylogenetically distant group of terpene synthases participates in cadinene and cedrane-type sesquiterpenes accumulation in Taiwania cryptomerioides. Plant Sci. 2019 Dec;289:110277. doi: 10.1016/j.plantsci.2019.110277. Epub 2019 Sep 17. [PubMed:31623780 ]
  7. Liu H, Chen M, Lang Y, Wang X, Zhuang P: Sesquiterpenes from the fruits of Illicium Simonsii maxim. Nat Prod Res. 2020 Apr;34(7):903-908. doi: 10.1080/14786419.2018.1538222. Epub 2019 Mar 11. [PubMed:30856347 ]
  8. Mazraati Tajabadi F, Pouwer RH, Liu M, Dashti Y, Campitelli MR, Murtaza M, Mellick GD, Wood SA, Jenkins ID, Quinn RJ: Design and Synthesis of Natural Product Inspired Libraries Based on the Three-Dimensional (3D) Cedrane Scaffold: Toward the Exploration of 3D Biological Space. J Med Chem. 2018 Aug 9;61(15):6609-6628. doi: 10.1021/acs.jmedchem.8b00194. Epub 2018 Jul 27. [PubMed:30005573 ]
  9. Peter C, Geoffroy P, Miesch M: Intramolecular Morita-Baylis-Hillman reaction as a strategy for the construction of tricyclic sesquiterpene cores. Org Biomol Chem. 2018 Feb 21;16(8):1381-1389. doi: 10.1039/c7ob03124f. [PubMed:29411822 ]
  10. Quang DN, Wagner C, Merzweiler K, Abate D, Porzel A, Schmidt J, Arnold N: Pyrofomins A-D, polyoxygenated sesquiterpenoids from Pyrofomes demidoffii. Fitoterapia. 2016 Jul;112:229-32. doi: 10.1016/j.fitote.2016.06.004. Epub 2016 Jun 14. [PubMed:27316978 ]
  11. LOTUS database [Link]