NP-MRD: Showing NP-Card for 2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one (NP0152799)

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Record Information

Version

2.0

Created at

2022-09-02 09:21:08 UTC

Updated at

2022-09-02 09:21:08 UTC

NP-MRD ID

NP0152799

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one

Description

2-Hydroxy-1,5-dimethyl-8-{2-[1-methyl-14-(propan-2-yl)-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]Hexadecan-2-yl]ethyl}-6-oxabicyclo[3.2.1]Octan-7-one belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. 2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one is found in Daphniphyllum oldhamii. Based on a literature review very few articles have been published on 2-hydroxy-1,5-dimethyl-8-{2-[1-methyl-14-(propan-2-yl)-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]Hexadecan-2-yl]ethyl}-6-oxabicyclo[3.2.1]Octan-7-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022211212D          

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M  END

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M  END


  Mrv1652309022211212D          

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    4.4887    3.2395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9155    2.6939    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0065    1.9202    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1402    2.9760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5280    0.3780    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0705   -0.4013    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0831   -0.0695    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 12 16  1  0  0  0  0
 16 17  1  0  0  0  0
  7 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 21 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 20 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 21 31  1  0  0  0  0
 17 32  1  0  0  0  0
  4 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
  9 34  1  0  0  0  0
 12 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0152799

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)C1CCC2(C)C3CCC45CCCC4C2(CCC2C4(C)CCC(O)C2(C)C(=O)O4)C1NC35

> <INCHI_IDENTIFIER>
InChI=1S/C30H47NO3/c1-17(2)18-8-13-26(3)19-9-15-29-12-6-7-21(29)30(26,23(18)31-24(19)29)16-10-20-27(4)14-11-22(32)28(20,5)25(33)34-27/h17-24,31-32H,6-16H2,1-5H3

> <INCHI_KEY>
GGYPDBWAGPOGDU-UHFFFAOYSA-N

> <FORMULA>
C30H47NO3

> <MOLECULAR_WEIGHT>
469.71

> <EXACT_MASS>
469.355594377

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
81

> <JCHEM_AVERAGE_POLARIZABILITY>
54.51896855169378

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-hydroxy-1,5-dimethyl-8-{2-[1-methyl-14-(propan-2-yl)-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,7}.0^{7,11}]hexadecan-2-yl]ethyl}-6-oxabicyclo[3.2.1]octan-7-one

> <ALOGPS_LOGP>
4.57

> <JCHEM_LOGP>
5.177280895999999

> <ALOGPS_LOGS>
-5.87

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.445615729034

> <JCHEM_PKA_STRONGEST_BASIC>
10.848829241389135

> <JCHEM_POLAR_SURFACE_AREA>
58.56

> <JCHEM_REFRACTIVITY>
132.26399999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.37e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,7}.0^{7,11}]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      10.915   3.209   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.619   2.210   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.866   1.168   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.903   2.171   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.843   3.110   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.467   1.350   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.673   0.923   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.976  -0.442   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.687  -0.840   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.362  -1.840   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.005  -0.969   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.433   0.567   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.767   0.730   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.253   2.179   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.603   2.973   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.050   2.054   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.919   1.943   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.882   3.131   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.117   4.501   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       4.982   6.017   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.505   7.015   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.133   7.916   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.340   8.309   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.872   8.462   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       6.948   7.360   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       8.280   8.290   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       6.756   5.832   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       8.379   6.047   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.442   5.029   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       5.612   3.584   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       3.995   5.555   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       6.586   0.706   0.000  0.00  0.00           C+0
HETATM   33  N   UNK     0       5.732  -0.749   0.000  0.00  0.00           N+0
HETATM   34  C   UNK     0       3.888  -0.130   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   32                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9   17                                             
CONECT    8    7                                                            
CONECT    9    7   10   34                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   16   34                                             
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   12   17                                                  
CONECT   17   16    7   18   32                                             
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   27                                                  
CONECT   21   20   22   23   31                                             
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   20   28   29                                             
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   21                                                       
CONECT   32   17    4   33                                                  
CONECT   33   32   34                                                       
CONECT   34   33    9   12                                                  
MASTER        0    0    0    0    0    0    0    0   34    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₄₇NO₃

Average Mass

469.7100 Da

Monoisotopic Mass

469.35559 Da

IUPAC Name

2-hydroxy-1,5-dimethyl-8-{2-[1-methyl-14-(propan-2-yl)-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,7}.0^{7,11}]hexadecan-2-yl]ethyl}-6-oxabicyclo[3.2.1]octan-7-one

Traditional Name

2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0^{2,13}.0^{3,7}.0^{7,11}]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one

CAS Registry Number

Not Available

SMILES

CC(C)C1CCC2(C)C3CCC45CCCC4C2(CCC2C4(C)CCC(O)C2(C)C(=O)O4)C1NC35

InChI Identifier

InChI=1S/C30H47NO3/c1-17(2)18-8-13-26(3)19-9-15-29-12-6-7-21(29)30(26,23(18)31-24(19)29)16-10-20-27(4)14-11-22(32)28(20,5)25(33)34-27/h17-24,31-32H,6-16H2,1-5H3

InChI Key

GGYPDBWAGPOGDU-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Daphniphyllum oldhamii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Steroid lactone
Daphniphylline-type alkaloid
Steroid
Quinolidine
Alkaloid or derivatives
Caprolactone
Oxepane
Gamma butyrolactone
Piperidine
Cyclic alcohol
Tetrahydrofuran
Secondary alcohol
Amino acid or derivatives
Carboxylic acid ester
Lactone
Organoheterocyclic compound
Oxacycle
Azacycle
Secondary amine
Carboxylic acid derivative
Secondary aliphatic amine
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxygen compound
Organonitrogen compound
Alcohol
Organooxygen compound
Organopnictogen compound
Carbonyl group
Organic nitrogen compound
Organic oxide
Amine
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.57	ALOGPS
logP	5.18	ChemAxon
logS	-5.9	ALOGPS
pKa (Strongest Acidic)	14.45	ChemAxon
pKa (Strongest Basic)	10.85	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	58.56 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	132.26 m³·mol⁻¹	ChemAxon
Polarizability	54.52 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73302045

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one (NP0152799)

MOL for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

3D MOL for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

3D SDF for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

3D-SDF for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

PDB for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

3D PDB for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

SMILES for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

INCHI for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

Structure for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)

3D Structure for NP0152799 (2-hydroxy-8-(2-{14-isopropyl-1-methyl-12-azapentacyclo[8.6.0.0²,¹³.0³,⁷.0⁷,¹¹]hexadecan-2-yl}ethyl)-1,5-dimethyl-6-oxabicyclo[3.2.1]octan-7-one)