NP-MRD: Showing NP-Card for (6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate (NP0152268)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-02 08:42:26 UTC

Updated at

2022-09-02 08:42:26 UTC

NP-MRD ID

NP0152268

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate

Description

(6S,7S,9S,10R,11S)-10-ethenyl-11-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6λ⁴-thia-3-azatricyclo[7.4.0.0³,⁷]Tridec-1(13)-ene-2,6-dione belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond. (6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate is found in Lonicera xylosteum. Based on a literature review very few articles have been published on (6S,7S,9S,10R,11S)-10-ethenyl-11-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6λ⁴-thia-3-azatricyclo[7.4.0.0³,⁷]Tridec-1(13)-ene-2,6-dione.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022210422D          

 29 32  0  0  1  0            999 V2000
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -0.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -1.4924    0.0000 S   0  3  2  0  0  0  0  0  0  0  0  0
    4.6119   -2.2771    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
  6 15  1  0  0  0  0
 15 16  1  6  0  0  0
  4 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 22  1  1  0  0  0
 27 28  1  0  0  0  0
 29 28  1  1  0  0  0
 19 29  1  0  0  0  0
  3 29  1  0  0  0  0
M  CHG  2  25   1  26  -1
M  END

     RDKit          3D

 54 57  0  0  0  0  0  0  0  0999 V2000
    1.0146    0.2068   -3.3520 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4345    1.0458   -2.5497 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8251    1.5325   -1.2325 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2018    1.2805   -0.1340 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4928    1.2477   -0.5939 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2235    0.1467   -0.1719 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2605    0.6343    0.6271 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9729   -0.3417    1.2686 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.4726   -0.1221    1.1913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9215   -0.1035   -0.1241 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6718   -1.7313    0.8288 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6007   -2.2438    1.5655 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4562   -1.8962   -0.6367 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.6212   -2.2788   -1.3044 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8549   -0.6457   -1.2710 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0125   -1.0535   -2.2711 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0042    2.4154    0.7564 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3238    2.4945    1.2348 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3228    1.9598    0.5847 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6818    1.9560    1.0939 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0529    2.9400    1.7972 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4861    0.8453    0.7632 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.8310    0.5089    1.1547 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5937   -0.7302    2.0346 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4430   -1.6079    0.9507 S   0  0  0  0  0  3  0  0  0  0  0  0
    3.0778   -1.9293    1.8822 O   0  0  0  0  0  1  0  0  0  0  0  0
    4.0122   -0.2064   -0.0870 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.5025   -0.1812   -0.3360 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1690    1.2170   -0.7290 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.5553   -0.0447   -4.3306 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9549   -0.2746   -3.1377 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5311    1.4682   -2.9359 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8181    2.6810   -1.3425 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0009    0.4072    0.4769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5515   -0.4712    0.4607 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7190   -0.2699    2.3650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7423    0.8682    1.6574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0138   -0.8799    1.7908 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8119   -0.5621   -0.1887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5550   -2.3728    1.1105 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9297   -2.3326    2.5060 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7344   -2.7303   -0.7779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3382   -2.7018   -2.1723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6690   -0.0522   -1.7373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4227   -0.9289   -3.1843 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5450    3.0154    2.1765 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3297    1.3062    1.7250 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4318    0.1821    0.2771 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5023   -1.3069    2.1895 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0958   -0.3670    2.9339 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5523   -0.2618   -1.0555 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0754   -0.3754    0.7002 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2286   -0.9853   -0.9951 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9263    1.6298   -1.4517 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4 17  1  0
 17 18  1  0
 18 19  2  0
 19 29  1  0
 29 28  1  0
 28 27  1  0
 27 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  1  1
 22 20  1  0
 20 21  2  0
 29  3  1  0
  3  2  1  0
  2  1  2  3
  6 15  1  0
 15 16  1  0
 15 13  1  0
 13 14  1  0
 13 11  1  0
 11 12  1  0
 11  8  1  0
  3  4  1  0
 20 19  1  0
 25 27  1  0
 10 39  1  0
  9 37  1  0
  9 38  1  0
  8 36  1  1
  6 35  1  1
  4 34  1  1
 18 46  1  0
 29 54  1  6
 28 52  1  0
 28 53  1  0
 27 51  1  6
 23 47  1  0
 23 48  1  0
 24 49  1  0
 24 50  1  0
  3 33  1  6
  2 32  1  0
  1 30  1  0
  1 31  1  0
 15 44  1  6
 16 45  1  0
 13 42  1  1
 14 43  1  0
 11 40  1  1
 12 41  1  0
M  CHG  2  25   1  26  -1
M  END


  Mrv1652309022210422D          

 29 32  0  0  1  0            999 V2000
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.1250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0000   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -0.1576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8419   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3570   -1.4924    0.0000 S   0  3  2  0  0  0  0  0  0  0  0  0
    4.6119   -2.2771    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  6  5  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  9 10  1  0  0  0  0
  8 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
  6 15  1  0  0  0  0
 15 16  1  6  0  0  0
  4 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  6  0  0  0
 25 27  1  0  0  0  0
 27 22  1  1  0  0  0
 27 28  1  0  0  0  0
 29 28  1  1  0  0  0
 19 29  1  0  0  0  0
  3 29  1  0  0  0  0
M  CHG  2  25   1  26  -1
M  END
> <DATABASE_ID>
NP0152268

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC[C@@H]1O[C@H](O[C@@H]2OC=C3[C@@H](C[C@H]4N(CC[S@@+]4[O-])C3=O)[C@H]2C=C)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C18H25NO9S/c1-2-8-9-5-12-19(3-4-29(12)25)16(24)10(9)7-26-17(8)28-18-15(23)14(22)13(21)11(6-20)27-18/h2,7-9,11-15,17-18,20-23H,1,3-6H2/t8-,9+,11+,12+,13+,14-,15+,17+,18-,29+/m1/s1

> <INCHI_KEY>
MQQDWHIPODBQOT-BPVPQLSFSA-N

> <FORMULA>
C18H25NO9S

> <MOLECULAR_WEIGHT>
431.46

> <EXACT_MASS>
431.125002563

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
54

> <JCHEM_AVERAGE_POLARIZABILITY>
42.133764944211606

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(6S,7S,9S,10R,11S)-10-ethenyl-2-oxo-11-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-6-ium-6-olate

> <ALOGPS_LOGP>
-1.37

> <JCHEM_LOGP>
-3.1418888416666664

> <ALOGPS_LOGS>
-1.11

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.19871903233646

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.207016193688952

> <JCHEM_PKA_STRONGEST_BASIC>
-0.07468607918744297

> <JCHEM_POLAR_SURFACE_AREA>
145.99

> <JCHEM_REFRACTIVITY>
100.02249999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.38e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(6S,7S,9S,10R,11S)-10-ethenyl-2-oxo-11-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-6-ium-6-olate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.334  -5.390   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       2.667  -9.240   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       0.000  -9.240   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -2.667  -7.700   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      -2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.335   1.540   0.000  0.00  0.00           O+0
HETATM   22  N   UNK     0       6.668  -0.770   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       8.133  -0.294   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.038  -1.540   0.000  0.00  0.00           C+0
HETATM   25  S   UNK     0       8.133  -2.786   0.000  0.00  0.00           S+1
HETATM   26  O   UNK     0       8.609  -4.251   0.000  0.00  0.00           O-1
HETATM   27  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   29                                                  
CONECT    4    3    5   17                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7   15                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   11                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    8   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13    6   16                                                  
CONECT   16   15                                                            
CONECT   17    4   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20   29                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   27                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   22   28                                                  
CONECT   28   27   29                                                       
CONECT   29   28   19    3                                                  
MASTER        0    0    0    0    0    0    0    0   29    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₅NO₉S

Average Mass

431.4600 Da

Monoisotopic Mass

431.12500 Da

IUPAC Name

(6S,7S,9S,10R,11S)-10-ethenyl-2-oxo-11-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-6-ium-6-olate

Traditional Name

(6S,7S,9S,10R,11S)-10-ethenyl-2-oxo-11-{[(2R,3S,4R,5R,6S)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0^{3,7}]tridec-1(13)-en-6-ium-6-olate

CAS Registry Number

Not Available

SMILES

OC[C@@H]1O[C@H](O[C@@H]2OC=C3[C@@H](C[C@H]4N(CC[S@@+]4[O-])C3=O)[C@H]2C=C)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C18H25NO9S/c1-2-8-9-5-12-19(3-4-29(12)25)16(24)10(9)7-26-17(8)28-18-15(23)14(22)13(21)11(6-20)27-18/h2,7-9,11-15,17-18,20-23H,1,3-6H2/t8-,9+,11+,12+,13+,14-,15+,17+,18-,29+/m1/s1

InChI Key

MQQDWHIPODBQOT-BPVPQLSFSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lonicera xylosteum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as o-glycosyl compounds. These are glycoside in which a sugar group is bonded through one carbon to another group via a O-glycosidic bond.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

O-glycosyl compounds

Alternative Parents

Substituents

Hexose monosaccharide
O-glycosyl compound
Delta-lactam
Piperidinone
Monosaccharide
Oxane
Piperidine
Tertiary carboxylic acid amide
Thiazolidine
Vinylogous ester
Carboxamide group
Sulfoxide
Secondary alcohol
Lactam
Sulfinyl compound
Acetal
Carboxylic acid derivative
Oxacycle
Azacycle
Organoheterocyclic compound
Polyol
Primary alcohol
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organonitrogen compound
Carbonyl group
Alcohol
Organic nitrogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-1.4	ALOGPS
logP	-3.1	ChemAxon
logS	-1.1	ALOGPS
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-0.075	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	145.99 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	100.02 m³·mol⁻¹	ChemAxon
Polarizability	42.13 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162929434

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate (NP0152268)

MOL for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

3D MOL for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

3D SDF for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

3D-SDF for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

PDB for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

3D PDB for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

SMILES for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

INCHI for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

Structure for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)

3D Structure for NP0152268 ((6s,7s,9s,10r,11s)-10-ethenyl-2-oxo-11-{[(2r,3s,4r,5r,6s)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-12-oxa-6-thia-3-azatricyclo[7.4.0.0³,⁷]tridec-1(13)-en-6-ium-6-olate)