NP-MRD: Showing NP-Card for leptinidine (NP0151768)

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Record Information

Version

2.0

Created at

2022-09-02 08:08:09 UTC

Updated at

2022-09-02 08:08:09 UTC

NP-MRD ID

NP0151768

Secondary Accession Numbers

None

Natural Product Identification

Common Name

leptinidine

Description

Leptinidine belongs to the class of organic compounds known as solanidines and derivatives. These are steroids with a structure based on the solanidane skeleton. Solanidane arises from the conversion of a cholestane side-chain into a bicyclic system. Thus, leptinidine is considered to be a sterol. leptinidine was first documented in 2006 (PMID: 17082950). Based on a literature review a small amount of articles have been published on Leptinidine (PMID: 34528865) (PMID: 20924746) (PMID: 19693483).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022210082D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309022210082D          

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M  END
> <DATABASE_ID>
NP0151768

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1[C@H]2[C@@H](O)C[C@H](C)CN2[C@H]2C[C@H]3[C@@H]4CC=C5C[C@@H](O)CC[C@]5(C)[C@H]4CC[C@]3(C)[C@@H]12

> <INCHI_IDENTIFIER>
InChI=1S/C27H43NO2/c1-15-11-23(30)25-16(2)24-22(28(25)14-15)13-21-19-6-5-17-12-18(29)7-9-26(17,3)20(19)8-10-27(21,24)4/h5,15-16,18-25,29-30H,6-14H2,1-4H3/t15-,16-,18-,19+,20-,21-,22-,23-,24-,25-,26-,27-/m0/s1

> <INCHI_KEY>
RFIYLZGMGGONQR-QFJXAUAASA-N

> <FORMULA>
C27H43NO2

> <MOLECULAR_WEIGHT>
413.646

> <EXACT_MASS>
413.329379629

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
73

> <JCHEM_AVERAGE_POLARIZABILITY>
51.027123326281426

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,7S,10R,11S,14S,15R,16S,17S,18S,20S,23S)-10,14,16,20-tetramethyl-22-azahexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,23}.0^{17,22}]tetracos-4-ene-7,18-diol

> <ALOGPS_LOGP>
3.82

> <JCHEM_LOGP>
3.807631614666666

> <ALOGPS_LOGS>
-4.38

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
18.204289505503816

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.602627514618796

> <JCHEM_PKA_STRONGEST_BASIC>
12.03549459965001

> <JCHEM_POLAR_SURFACE_AREA>
43.7

> <JCHEM_REFRACTIVITY>
122.21889999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.72e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,7S,10R,11S,14S,15R,16S,17S,18S,20S,23S)-10,14,16,20-tetramethyl-22-azahexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,23}.0^{17,22}]tetracos-4-ene-7,18-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       7.632  -4.234   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.648  -5.391   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.154  -6.849   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.171  -8.006   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       8.677  -9.465   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      10.681  -7.705   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.916  -8.625   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.897 -10.165   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.172  -7.735   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      12.715  -6.265   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.972  -5.375   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      15.206  -6.296   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      16.716  -5.994   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      17.210  -4.535   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      18.720  -4.234   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      19.737  -5.391   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      21.247  -5.089   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      22.263  -6.246   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      23.773  -5.944   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      21.769  -7.705   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      20.259  -8.006   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      19.243  -6.849   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      18.749  -8.308   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      17.733  -7.151   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      17.239  -8.610   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      15.729  -8.911   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.712  -7.754   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      14.069  -9.153   0.000  0.00  0.00           C+0
HETATM   29  N   UNK     0      11.175  -6.246   0.000  0.00  0.00           N+0
HETATM   30  C   UNK     0      10.158  -5.089   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   30                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   29                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   27                                                  
CONECT   10    9   11   29                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   27                                                  
CONECT   13   12   14   24                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   22                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   16   23   24                                             
CONECT   23   22                                                            
CONECT   24   22   13   25                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   12    9   28                                             
CONECT   28   27                                                            
CONECT   29   10    6   30                                                  
CONECT   30   29    2                                                       
MASTER        0    0    0    0    0    0    0    0   30    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₃NO₂

Average Mass

413.6460 Da

Monoisotopic Mass

413.32938 Da

IUPAC Name

(1S,2S,7S,10R,11S,14S,15R,16S,17S,18S,20S,23S)-10,14,16,20-tetramethyl-22-azahexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,23}.0^{17,22}]tetracos-4-ene-7,18-diol

Traditional Name

(1S,2S,7S,10R,11S,14S,15R,16S,17S,18S,20S,23S)-10,14,16,20-tetramethyl-22-azahexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,23}.0^{17,22}]tetracos-4-ene-7,18-diol

CAS Registry Number

Not Available

SMILES

C[C@@H]1[C@H]2[C@@H](O)C[C@H](C)CN2[C@H]2C[C@H]3[C@@H]4CC=C5C[C@@H](O)CC[C@]5(C)[C@H]4CC[C@]3(C)[C@@H]12

InChI Identifier

InChI=1S/C27H43NO2/c1-15-11-23(30)25-16(2)24-22(28(25)14-15)13-21-19-6-5-17-12-18(29)7-9-26(17,3)20(19)8-10-27(21,24)4/h5,15-16,18-25,29-30H,6-14H2,1-4H3/t15-,16-,18-,19+,20-,21-,22-,23-,24-,25-,26-,27-/m0/s1

InChI Key

RFIYLZGMGGONQR-QFJXAUAASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as solanidines and derivatives. These are steroids with a structure based on the solanidane skeleton. Solanidane arises from the conversion of a cholestane side-chain into a bicyclic system.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal alkaloids

Direct Parent

Solanidines and derivatives

Alternative Parents

Substituents

Solanidane skeleton
23-hydroxysteroid
3-hydroxy-delta-5-steroid
3-hydroxysteroid
Hydroxysteroid
3-beta-hydroxysteroid
3-beta-hydroxy-delta-5-steroid
Azasteroid
Delta-5-steroid
Alkaloid or derivatives
Indolizidine
N-alkylpyrrolidine
Piperidine
Cyclic alcohol
Pyrrolidine
Tertiary amine
Tertiary aliphatic amine
1,2-aminoalcohol
Secondary alcohol
Organoheterocyclic compound
Azacycle
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Organopnictogen compound
Amine
Alcohol
Organic oxygen compound
Organic nitrogen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Solanidines and alkaloid derivatives (LMST01150009 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.82	ALOGPS
logP	3.81	ChemAxon
logS	-4.4	ALOGPS
pKa (Strongest Acidic)	14.6	ChemAxon
pKa (Strongest Basic)	12.04	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	43.7 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	122.22 m³·mol⁻¹	ChemAxon
Polarizability	51.03 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

161334

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

185580

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Thodi RC, Ibrahim JM, Surendran VA, Nair AS, Sukumaran ST: Rutaretin1'-(6''-sinapoylglucoside): promising inhibitor of COVID 19 m(pro) catalytic dyad from the leaves of Pittosporum dasycaulon miq (Pittosporaceae). J Biomol Struct Dyn. 2022;40(23):12557-12573. doi: 10.1080/07391102.2021.1972841. Epub 2021 Sep 16. [PubMed:34528865 ]
Sagredo B, Lorenzen J, Casper H, Lafta A: Linkage analysis of a rare alkaloid present in a tetraploid potato with Solanum chacoense background. Theor Appl Genet. 2011 Feb;122(3):471-8. doi: 10.1007/s00122-010-1461-z. Epub 2010 Oct 6. [PubMed:20924746 ]
Sagredo B, Balbyshev N, Lafta A, Casper H, Lorenzen J: A QTL that confers resistance to Colorado potato beetle (Leptinotarsa decemlineata [Say]) in tetraploid potato populations segregating for leptine. Theor Appl Genet. 2009 Nov;119(7):1171-81. doi: 10.1007/s00122-009-1118-y. Epub 2009 Aug 20. [PubMed:19693483 ]
Sagredo B, Lafta A, Casper H, Lorenzen J: Mapping of genes associated with leptine content of tetraploid potato. Theor Appl Genet. 2006 Dec;114(1):131-42. doi: 10.1007/s00122-006-0416-x. Epub 2006 Nov 3. [PubMed:17082950 ]
LOTUS database [Link]

Showing NP-Card for leptinidine (NP0151768)

MOL for NP0151768 (leptinidine)

3D MOL for NP0151768 (leptinidine)

3D SDF for NP0151768 (leptinidine)

3D-SDF for NP0151768 (leptinidine)

PDB for NP0151768 (leptinidine)

3D PDB for NP0151768 (leptinidine)

SMILES for NP0151768 (leptinidine)

INCHI for NP0151768 (leptinidine)

Structure for NP0151768 (leptinidine)

3D Structure for NP0151768 (leptinidine)