NP-MRD: Showing NP-Card for (1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol (NP0151164)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-02 07:26:31 UTC

Updated at

2022-09-02 07:26:31 UTC

NP-MRD ID

NP0151164

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol

Description

Ambelline belongs to the class of organic compounds known as crinine- and haemanthamine-type amaryllidaceae alkaloids. These are amaryllidaceae alkaloids compounds with a structure based on the crinine or haemanthamine backbone. Both backbones have a common 5,10b-ethano bridge moiety in their frameworks, which is a very significant taxonomic feature, and the configurations of the 5,10b-ethano bridge are opposite to each other. (1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol is found in Amaryllis belladonna, Ammocharis tinneana, Crinum asiaticum, Crinum latifolium and Nerine bowdenii. (1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol was first documented in 2005 (PMID: 15680994). Based on a literature review a small amount of articles have been published on Ambelline (PMID: 32309949) (PMID: 26577707) (PMID: 21442675).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022209262D          

 24 28  0  0  1  0            999 V2000
    5.7471   -1.9204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9428   -1.7370    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6994   -0.9488    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8950   -0.7654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6517    0.0229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2127    0.6278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0170    0.4444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2604   -0.3438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0853   -0.3560    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3518    0.4248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6915    0.9195    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8836    0.3241    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3825    0.9795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5644    0.8731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2474    0.1114    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4293    0.0051    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0719    0.6604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7486   -0.5439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5667   -0.4376    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6078   -1.5090    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4305   -1.4471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0465   -0.9044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1693   -0.0885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4875    0.3760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  7 11  1  0  0  0  0
 12  5  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
  4 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  1  0  0  0
M  END

     RDKit          3D

 45 49  0  0  0  0  0  0  0  0999 V2000
   -3.9646   -2.6286   -0.3532 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5961   -1.6684    0.5984 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8834   -0.5169    0.3184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5063   -0.4712    0.3583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8052    0.6998    0.0727 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5118    1.8068   -0.2490 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9110    1.7806   -0.2950 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5982    0.6129   -0.0098 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9482    0.9337   -0.1463 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1063    2.3482   -0.0695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8389    2.7699   -0.5937 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6791    0.5936    0.1573 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.3916    1.6849   -0.4940 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6359    1.4639   -0.9069 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3122    0.1479   -0.7241 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.3215   -0.0206   -1.6842 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5646   -0.2329   -1.1145 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3675   -1.0027   -0.8616 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9990   -0.7804   -0.3821 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6085   -1.6237    0.7318 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8142   -1.7425    0.7244 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1409   -0.9538    1.8916 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9883    0.5068    1.6486 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0793    1.2714    2.0082 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4749   -2.5214   -1.3222 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0577   -2.6091   -0.4499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6935   -3.6319    0.0751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9891    2.7069   -0.4685 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9449    2.7157   -0.6565 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1083    2.6848    0.9952 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0171    2.6833   -0.6865 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2299    2.2407   -1.4044 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8166    0.0597    0.2600 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9047    0.5979   -0.4673 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5661   -1.2111   -0.6113 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2920   -0.2922   -1.9500 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3822   -1.3453   -1.9324 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8053   -1.8765   -0.2965 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2715   -1.0299   -1.2102 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1670   -2.0744    1.7292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0745   -2.5559   -0.0080 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1809   -1.2453    2.1077 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5329   -1.3098    2.7667 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1329    0.8637    2.2746 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7734    2.1714    2.2451 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 16  1  0
 16 15  1  0
 15 18  1  0
 18 19  1  0
 19 20  1  0
 20 22  1  0
 22 23  1  0
 23 24  1  0
 23 12  1  0
 12 13  1  6
 13 14  2  0
 12  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
  8  3  1  0
  3  2  1  0
  2  1  1  0
  3  4  2  0
  4 21  1  0
 14 15  1  0
  4  5  1  0
 12 19  1  0
 11  7  1  0
 21 20  1  0
 17 34  1  0
 17 35  1  0
 17 36  1  0
 15 33  1  1
 18 37  1  0
 18 38  1  0
 19 39  1  6
 22 42  1  0
 22 43  1  0
 23 44  1  1
 24 45  1  0
 13 31  1  0
 14 32  1  0
  6 28  1  0
 10 29  1  0
 10 30  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
 21 40  1  0
 21 41  1  0
M  END


  Mrv1652309022209262D          

 24 28  0  0  1  0            999 V2000
    5.7471   -1.9204    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9428   -1.7370    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.6994   -0.9488    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8950   -0.7654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6517    0.0229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2127    0.6278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0170    0.4444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2604   -0.3438    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0853   -0.3560    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3518    0.4248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6915    0.9195    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8836    0.3241    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3825    0.9795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5644    0.8731    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2474    0.1114    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.4293    0.0051    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0719    0.6604    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7486   -0.5439    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5667   -0.4376    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6078   -1.5090    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4305   -1.4471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0465   -0.9044    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1693   -0.0885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4875    0.3760    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  7 11  1  0  0  0  0
 12  5  1  6  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  1  0  0  0
 16 17  1  0  0  0  0
 15 18  1  0  0  0  0
 18 19  1  0  0  0  0
 12 19  1  0  0  0  0
 19 20  1  6  0  0  0
 20 21  1  0  0  0  0
  4 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0151164

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@H]1C[C@H]2N3C[C@@H](O)[C@]2(C=C1)C1=CC2=C(OCO2)C(OC)=C1C3

> <INCHI_IDENTIFIER>
InChI=1S/C18H21NO5/c1-21-10-3-4-18-12-6-13-17(24-9-23-13)16(22-2)11(12)7-19(8-15(18)20)14(18)5-10/h3-4,6,10,14-15,20H,5,7-9H2,1-2H3/t10-,14+,15+,18+/m0/s1

> <INCHI_KEY>
QAHZAHIPKNLGAS-QMJNRFBBSA-N

> <FORMULA>
C18H21NO5

> <MOLECULAR_WEIGHT>
331.368

> <EXACT_MASS>
331.14197278

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
45

> <JCHEM_AVERAGE_POLARIZABILITY>
34.64352030388316

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,13R,15R,18S)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0^{1,13}.0^{2,10}.0^{4,8}]nonadeca-2,4(8),9,16-tetraen-18-ol

> <ALOGPS_LOGP>
0.61

> <JCHEM_LOGP>
0.6680778936666671

> <ALOGPS_LOGS>
-2.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.114147253320958

> <JCHEM_PKA_STRONGEST_BASIC>
8.031100711315457

> <JCHEM_POLAR_SURFACE_AREA>
60.39

> <JCHEM_REFRACTIVITY>
87.56729999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.85e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1R,13R,15R,18S)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0^{1,13}.0^{2,10}.0^{4,8}]nonadeca-2,4(8),9,16-tetraen-18-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      10.728  -3.585   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       9.227  -3.242   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       8.772  -1.771   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.271  -1.429   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.816   0.043   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.864   1.172   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.365   0.830   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.819  -0.642   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      11.359  -0.665   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      11.857   0.793   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      10.624   1.716   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       5.383   0.605   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.447   1.828   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.920   1.630   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.328   0.208   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       0.801   0.009   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      -0.134   1.233   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.264  -1.015   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.791  -0.817   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0       4.868  -2.817   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0       6.404  -2.701   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.820  -1.688   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.049  -0.165   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.777   0.702   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5   21                                                  
CONECT    5    4    6   12                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8   11                                                  
CONECT    8    7    3    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    7                                                       
CONECT   12    5   13   19   23                                             
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   18                                                  
CONECT   16   15   17                                                       
CONECT   17   16                                                            
CONECT   18   15   19                                                       
CONECT   19   18   12   20                                                  
CONECT   20   19   21   22                                                  
CONECT   21   20    4                                                       
CONECT   22   20   23                                                       
CONECT   23   22   12   24                                                  
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₂₁NO₅

Average Mass

331.3680 Da

Monoisotopic Mass

331.14197 Da

IUPAC Name

(1R,13R,15R,18S)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0^{1,13}.0^{2,10}.0^{4,8}]nonadeca-2,4(8),9,16-tetraen-18-ol

Traditional Name

(1R,13R,15R,18S)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0^{1,13}.0^{2,10}.0^{4,8}]nonadeca-2,4(8),9,16-tetraen-18-ol

CAS Registry Number

Not Available

SMILES

CO[C@@H]1C[C@H]2N3C[C@@H](O)[C@]2(C=C1)C1=CC2=C(OCO2)C(OC)=C1C3

InChI Identifier

InChI=1S/C18H21NO5/c1-21-10-3-4-18-12-6-13-17(24-9-23-13)16(22-2)11(12)7-19(8-15(18)20)14(18)5-10/h3-4,6,10,14-15,20H,5,7-9H2,1-2H3/t10-,14+,15+,18+/m0/s1

InChI Key

QAHZAHIPKNLGAS-QMJNRFBBSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Amaryllis belladonna	LOTUS Database	35616633
Ammocharis tinneana	LOTUS Database	35616633
Crinum asiaticum	LOTUS Database	35616633
Crinum latifolium	LOTUS Database	35616633
Nerine bowdenii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as crinine- and haemanthamine-type amaryllidaceae alkaloids. These are amaryllidaceae alkaloids compounds with a structure based on the crinine or haemanthamine backbone. Both backbones have a common 5,10b-ethano bridge moiety in their frameworks, which is a very significant taxonomic feature, and the configurations of the 5,10b-ethano bridge are opposite to each other.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Amaryllidaceae alkaloids

Sub Class

Crinine- and Haemanthamine-type amaryllidaceae alkaloids

Direct Parent

Crinine- and Haemanthamine-type amaryllidaceae alkaloids

Alternative Parents

Substituents

Hemanthamine/crinine alkaloid skeleton
Benzoquinoline
Phenanthridine
Benzazepine
Tetrahydroisoquinoline
Quinoline
Benzodioxole
Indole or derivatives
Anisole
Alkyl aryl ether
Azepine
Aralkylamine
Benzenoid
N-alkylpyrrolidine
Pyrrolidine
Tertiary amine
1,2-aminoalcohol
Tertiary aliphatic amine
Secondary alcohol
Acetal
Oxacycle
Azacycle
Dialkyl ether
Ether
Organoheterocyclic compound
Hydrocarbon derivative
Organopnictogen compound
Organooxygen compound
Alcohol
Organic nitrogen compound
Amine
Organic oxygen compound
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.61	ALOGPS
logP	0.67	ChemAxon
logS	-2.2	ALOGPS
pKa (Strongest Acidic)	14.11	ChemAxon
pKa (Strongest Basic)	8.03	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	60.39 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	87.57 m³·mol⁻¹	ChemAxon
Polarizability	34.64 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00001561

Chemspider ID

390254

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

441585

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Marikova J, Ritomska A, Korabecny J, Perinova R, Al Mamun A, Kucera T, Kohelova E, Hulcova D, Kobrlova T, Kunes J, Novakova L, Cahlikova L: Aromatic Esters of the Crinane Amaryllidaceae Alkaloid Ambelline as Selective Inhibitors of Butyrylcholinesterase. J Nat Prod. 2020 May 22;83(5):1359-1367. doi: 10.1021/acs.jnatprod.9b00561. Epub 2020 Apr 20. [PubMed:32309949 ]
Hroch M, Micuda S, Havelek R, Cermanova J, Cahlikova L, Hostalkova A, Hulcova D, Rezacova M: LC-MS/MS method for the determination of haemanthamine in rat plasma, bile and urine and its application to a pilot pharmacokinetic study. Biomed Chromatogr. 2016 Jul;30(7):1083-1091. doi: 10.1002/bmc.3653. Epub 2015 Dec 13. [PubMed:26577707 ]
Berkov S, Romani S, Herrera M, Viladomat F, Codina C, Momekov G, Ionkova I, Bastida J: Antiproliferative alkaloids from Crinum zeylanicum. Phytother Res. 2011 Nov;25(11):1686-92. doi: 10.1002/ptr.3468. Epub 2011 Mar 25. [PubMed:21442675 ]
Nair JJ, Campbell WE, Brun R, Viladomat F, Codina C, Bastida J: Alkaloids from Nerine filifolia. Phytochemistry. 2005 Feb;66(3):373-82. doi: 10.1016/j.phytochem.2004.12.009. [PubMed:15680994 ]
LOTUS database [Link]

Showing NP-Card for (1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol (NP0151164)

MOL for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

3D MOL for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

3D SDF for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

3D-SDF for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

PDB for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

3D PDB for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

SMILES for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

INCHI for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

Structure for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)

3D Structure for NP0151164 ((1r,13r,15r,18s)-9,15-dimethoxy-5,7-dioxa-12-azapentacyclo[10.5.2.0¹,¹³.0²,¹⁰.0⁴,⁸]nonadeca-2,4(8),9,16-tetraen-18-ol)