NP-MRD: Showing NP-Card for (1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate (NP0151089)

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Record Information

Version

2.0

Created at

2022-09-02 07:20:57 UTC

Updated at

2022-09-02 07:20:57 UTC

NP-MRD ID

NP0151089

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate

Description

Triptogelin F-2 belongs to the class of organic compounds known as agarofurans. These are organic compounds containing an agarofuran moiety( a three-ring system, with core fragment oxatricyclo[7.2.1.0^{1,6}]Dodec-2-ene). (1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate is found in Celastrus flagellaris, Celastrus vulcanicola and Tripterygium wilfordii. (1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate was first documented in 1997 (PMID: 11498874). Based on a literature review very few articles have been published on Triptogelin F-2.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022209202D          

 35 38  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309022209202D          

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 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
 17 29  1  0  0  0  0
  5 29  1  0  0  0  0
 10 29  1  0  0  0  0
 29 30  1  6  0  0  0
 15 31  1  0  0  0  0
 10 31  1  0  0  0  0
 31 32  1  6  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0151089

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@H]1CC[C@H](OC(C)=O)[C@@]2(C)[C@H](C[C@@H]3[C@@H](OC(C)=O)[C@]12OC3(C)C)OC(=O)\C=C\C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C28H36O7/c1-17-12-14-22(32-18(2)29)27(6)23(34-24(31)15-13-20-10-8-7-9-11-20)16-21-25(33-19(3)30)28(17,27)35-26(21,4)5/h7-11,13,15,17,21-23,25H,12,14,16H2,1-6H3/b15-13+/t17-,21-,22+,23+,25-,27+,28-/m1/s1

> <INCHI_KEY>
PHQKKMDLNZBZEJ-FPTXUMJCSA-N

> <FORMULA>
C28H36O7

> <MOLECULAR_WEIGHT>
484.589

> <EXACT_MASS>
484.246103499

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
52.16918941731315

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2R,5S,6S,7S,9R,12R)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0^{1,6}]dodecan-7-yl (2E)-3-phenylprop-2-enoate

> <ALOGPS_LOGP>
4.91

> <JCHEM_LOGP>
4.380903791

> <ALOGPS_LOGS>
-5.71

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.2315347493857125

> <JCHEM_POLAR_SURFACE_AREA>
88.13

> <JCHEM_REFRACTIVITY>
128.6894

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.50e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2R,5S,6S,7S,9R,12R)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0^{1,6}]dodecan-7-yl (2E)-3-phenylprop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      11.139  -3.441   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.041  -2.256   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      11.221  -1.198   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       8.369  -2.212   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.690  -1.749   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.528  -0.443   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.832   0.943   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.292   1.038   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.283   2.664   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.358  -0.230   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       3.086   0.855   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       1.668   0.065   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.049  -0.298   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.739   1.433   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.976  -1.516   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.664  -2.977   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.264  -3.104   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.461  -4.993   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       4.009  -6.712   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.496  -7.311   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       4.485  -8.266   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       3.822  -9.723   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.717 -10.976   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       6.250 -10.828   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       7.145 -12.081   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.507 -13.483   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       4.974 -13.631   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.079 -12.378   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.118  -1.701   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.282  -2.912   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       3.242  -0.958   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       3.530  -2.502   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       2.150  -3.690   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       2.553  -5.224   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       0.457  -3.318   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   29   31                                             
CONECT   11   10   12                                                       
CONECT   12   11   13   14   15                                             
CONECT   13   12                                                            
CONECT   14   12                                                            
CONECT   15   12   16   31                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   29                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   28                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   23                                                       
CONECT   29   17    5   10   30                                             
CONECT   30   29                                                            
CONECT   31   15   10   32                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₈H₃₆O₇

Average Mass

484.5890 Da

Monoisotopic Mass

484.24610 Da

IUPAC Name

(1S,2R,5S,6S,7S,9R,12R)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0^{1,6}]dodecan-7-yl (2E)-3-phenylprop-2-enoate

Traditional Name

(1S,2R,5S,6S,7S,9R,12R)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0^{1,6}]dodecan-7-yl (2E)-3-phenylprop-2-enoate

CAS Registry Number

Not Available

SMILES

C[C@@H]1CC[C@H](OC(C)=O)[C@@]2(C)[C@H](C[C@@H]3[C@@H](OC(C)=O)[C@]12OC3(C)C)OC(=O)\C=C\C1=CC=CC=C1

InChI Identifier

InChI=1S/C28H36O7/c1-17-12-14-22(32-18(2)29)27(6)23(34-24(31)15-13-20-10-8-7-9-11-20)16-21-25(33-19(3)30)28(17,27)35-26(21,4)5/h7-11,13,15,17,21-23,25H,12,14,16H2,1-6H3/b15-13+/t17-,21-,22+,23+,25-,27+,28-/m1/s1

InChI Key

PHQKKMDLNZBZEJ-FPTXUMJCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Celastrus flagellaris	LOTUS Database	35616633
Celastrus vulcanicola	LOTUS Database	35616633
Tripterygium wilfordii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as agarofurans. These are organic compounds containing an agarofuran moiety( a three-ring system, with core fragment oxatricyclo[7.2.1.0^{1,6}]Dodec-2-ene).

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Agarofurans

Alternative Parents

Substituents

Agarofuran
Cinnamic acid or derivatives
Cinnamic acid ester
Tricarboxylic acid or derivatives
Styrene
Fatty acid ester
Oxepane
Fatty acyl
Benzenoid
Monocyclic benzene moiety
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Carboxylic acid ester
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Dialkyl ether
Ether
Hydrocarbon derivative
Organic oxide
Carbonyl group
Organic oxygen compound
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.91	ALOGPS
logP	4.38	ChemAxon
logS	-5.7	ALOGPS
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	88.13 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	128.69 m³·mol⁻¹	ChemAxon
Polarizability	52.17 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

26608177

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

53249020

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wang MA, Liu J, Chen FH: [The sesquiterpenoids from Celastrus flagellaris]. Yao Xue Xue Bao. 1997 May;32(5):368-72. [PubMed:11498874 ]
LOTUS database [Link]

Showing NP-Card for (1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate (NP0151089)

MOL for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

3D MOL for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

3D SDF for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

3D-SDF for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

PDB for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

3D PDB for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

SMILES for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

INCHI for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

Structure for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)

3D Structure for NP0151089 ((1s,2r,5s,6s,7s,9r,12r)-5,12-bis(acetyloxy)-2,6,10,10-tetramethyl-11-oxatricyclo[7.2.1.0¹,⁶]dodecan-7-yl (2e)-3-phenylprop-2-enoate)