NP-MRD: Showing NP-Card for 1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione (NP0151056)

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Record Information

Version

2.0

Created at

2022-09-02 07:18:48 UTC

Updated at

2022-09-02 07:18:48 UTC

NP-MRD ID

NP0151056

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione

Description

1,3-Dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)-2,3,6,7-tetrahydro-1H-purine-2,6-dione belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units. 1,3-Dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)-2,3,6,7-tetrahydro-1H-purine-2,6-dione is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004181502432D          

 34 35  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1533004181502432D          

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 28 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 20 32  1  0  0  0  0
 23 32  2  0  0  0  0
 17 33  1  0  0  0  0
 13 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0151056

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)CC(=O)C=C(C)CCCC(C)=CCCC(C)=CCN1C=NC2=C1C(=O)N(C)C(=O)N2C

> <INCHI_IDENTIFIER>
InChI=1S/C27H40N4O3/c1-19(2)16-23(32)17-22(5)13-9-11-20(3)10-8-12-21(4)14-15-31-18-28-25-24(31)26(33)30(7)27(34)29(25)6/h10,14,17-19H,8-9,11-13,15-16H2,1-7H3

> <INCHI_KEY>
AGFODGWANODHCG-UHFFFAOYSA-N

> <FORMULA>
C27H40N4O3

> <MOLECULAR_WEIGHT>
468.642

> <EXACT_MASS>
468.310041164

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
74

> <JCHEM_AVERAGE_POLARIZABILITY>
54.64017490265526

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)-2,3,6,7-tetrahydro-1H-purine-2,6-dione

> <ALOGPS_LOGP>
4.77

> <JCHEM_LOGP>
5.380850225333331

> <ALOGPS_LOGS>
-5.28

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-0.9874503825663922

> <JCHEM_POLAR_SURFACE_AREA>
75.51

> <JCHEM_REFRACTIVITY>
140.12529999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.44e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 18-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   18-APR-15         0                                  
HETATM    1  C   UNK     0     -11.668   6.791   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -12.143   5.326   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -13.650   5.006   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -11.113   4.182   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -11.589   2.717   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0     -13.095   2.397   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0     -10.558   1.573   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -11.034   0.108   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -12.541  -0.212   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -10.004  -1.036   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -8.498  -0.716   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -7.467  -1.861   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -5.961  -1.541   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -4.930  -2.685   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.424  -2.365   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.393  -3.509   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -0.887  -3.189   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.143  -4.334   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.650  -4.013   0.000  0.00  0.00           C+0
HETATM   20  N   UNK     0       2.126  -2.549   0.000  0.00  0.00           N+0
HETATM   21  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0       2.126  -0.057   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0       4.924   0.237   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0       4.924   1.777   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       7.591   0.237   0.000  0.00  0.00           O+0
HETATM   28  N   UNK     0       6.258  -2.073   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0       7.591  -2.843   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.924  -4.383   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -0.411  -1.724   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -5.485  -0.076   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   34                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   33                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   32                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   32                                                  
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   20   23                                                  
CONECT   33   17                                                            
CONECT   34   13                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₄₀N₄O₃

Average Mass

468.6420 Da

Monoisotopic Mass

468.31004 Da

IUPAC Name

1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)-2,3,6,7-tetrahydro-1H-purine-2,6-dione

Traditional Name

1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione

CAS Registry Number

Not Available

SMILES

CC(C)CC(=O)C=C(C)CCCC(C)=CCCC(C)=CCN1C=NC2=C1C(=O)N(C)C(=O)N2C

InChI Identifier

InChI=1S/C27H40N4O3/c1-19(2)16-23(32)17-22(5)13-9-11-20(3)10-8-12-21(4)14-15-31-18-28-25-24(31)26(33)30(7)27(34)29(25)6/h10,14,17-19H,8-9,11-13,15-16H2,1-7H3

InChI Key

AGFODGWANODHCG-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpenoids. These are terpene compounds formed by four isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Diterpenoids

Alternative Parents

Substituents

Diterpenoid
Xanthine
6-oxopurine
Purinone
Imidazopyrimidine
Purine
Alkaloid or derivatives
Pyrimidone
N-substituted imidazole
Pyrimidine
Acryloyl-group
Azole
Enone
Imidazole
Heteroaromatic compound
Vinylogous amide
Alpha,beta-unsaturated ketone
Lactam
Ketone
Urea
Azacycle
Organoheterocyclic compound
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organic nitrogen compound
Organooxygen compound
Carbonyl group
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.77	ALOGPS
logP	5.38	ChemAxon
logS	-5.3	ALOGPS
pKa (Strongest Basic)	-0.99	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	75.51 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	140.13 m³·mol⁻¹	ChemAxon
Polarizability	54.64 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione (NP0151056)

MOL for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

3D MOL for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

3D SDF for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

3D-SDF for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

PDB for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

3D PDB for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

SMILES for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

INCHI for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

Structure for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)

3D Structure for NP0151056 (1,3-dimethyl-7-(3,7,11,15-tetramethyl-13-oxohexadeca-2,6,11-trien-1-yl)purine-2,6-dione)