NP-MRD: Showing NP-Card for (4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol (NP0150898)

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Record Information

Version

2.0

Created at

2022-09-02 07:08:05 UTC

Updated at

2022-09-02 07:08:05 UTC

NP-MRD ID

NP0150898

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol

Description

(4S,5S,11S,12R)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]Trideca-1(9),2(6),7-triene-7,12-diol belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety. (4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol is found in Gnetum gnemon. Based on a literature review very few articles have been published on (4S,5S,11S,12R)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]Trideca-1(9),2(6),7-triene-7,12-diol.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022209082D          

 37 42  0  0  1  0            999 V2000
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M  END

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M  END


  Mrv1652309022209082D          

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 25 33  1  0  0  0  0
 33 34  1  6  0  0  0
 33 35  1  0  0  0  0
  9 35  1  0  0  0  0
  5 36  1  0  0  0  0
 36 37  2  0  0  0  0
  2 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0150898

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@@H]1CC2=C3O[C@@H]([C@H](C3=C(O)C=C2O[C@H]1C1=CC=C(O)C=C1)C1=CC(O)=CC(O)=C1)C1=CC=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C29H24O8/c30-17-5-1-14(2-6-17)27-23(35)12-21-24(36-27)13-22(34)26-25(16-9-19(32)11-20(33)10-16)28(37-29(21)26)15-3-7-18(31)8-4-15/h1-11,13,23,25,27-28,30-35H,12H2/t23-,25+,27+,28-/m1/s1

> <INCHI_KEY>
LYHUHVLRBIYLBQ-CJLVWDJLSA-N

> <FORMULA>
C29H24O8

> <MOLECULAR_WEIGHT>
500.503

> <EXACT_MASS>
500.147117733

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
52.44393069965048

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
6

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(4S,5S,11S,12R)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0^{2,6}]trideca-1,6,8-triene-7,12-diol

> <ALOGPS_LOGP>
3.53

> <JCHEM_LOGP>
4.656775920666666

> <ALOGPS_LOGS>
-4.70

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.295937350781358

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.837097318168523

> <JCHEM_PKA_STRONGEST_BASIC>
-3.286845836108818

> <JCHEM_POLAR_SURFACE_AREA>
139.84

> <JCHEM_REFRACTIVITY>
134.6028

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.00e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(4S,5S,11S,12R)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0^{2,6}]trideca-1,6,8-triene-7,12-diol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  O   UNK     0      -5.153  -7.548   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0      -3.844  -6.737   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -3.892  -5.198   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.583  -4.386   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.226  -5.114   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.083  -4.303   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       1.509  -4.885   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       2.503  -3.709   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.042  -3.661   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.770  -2.304   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       3.959  -0.995   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.420  -1.043   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       1.609   0.266   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       1.692  -2.400   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.196  -2.767   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.980  -1.773   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.429  -2.294   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -3.605  -1.300   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -5.054  -1.821   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -3.332   0.216   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -1.883   0.737   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -1.610   2.253   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.707  -0.257   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       6.310  -2.256   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       7.121  -3.565   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       8.660  -3.517   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.388  -2.160   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      10.927  -2.111   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      11.739  -3.420   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      13.278  -3.372   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      11.011  -4.778   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       9.471  -4.826   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       6.393  -4.922   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       7.204  -6.231   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       4.854  -4.970   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      -1.178  -6.653   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -2.487  -7.465   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   37                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   36                                                  
CONECT    6    5    7   15                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10   35                                                  
CONECT   10    9   11   24                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12    8   15                                                  
CONECT   15   14    6   16                                                  
CONECT   16   15   17   23                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   16                                                       
CONECT   24   10   25                                                       
CONECT   25   24   26   33                                                  
CONECT   26   25   27   32                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   26                                                       
CONECT   33   25   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33    9                                                       
CONECT   36    5   37                                                       
CONECT   37   36    2                                                       
MASTER        0    0    0    0    0    0    0    0   37    0   84    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₂₄O₈

Average Mass

500.5030 Da

Monoisotopic Mass

500.14712 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

O[C@@H]1CC2=C3O[C@@H]([C@H](C3=C(O)C=C2O[C@H]1C1=CC=C(O)C=C1)C1=CC(O)=CC(O)=C1)C1=CC=C(O)C=C1

InChI Identifier

InChI=1S/C29H24O8/c30-17-5-1-14(2-6-17)27-23(35)12-21-24(36-27)13-22(34)26-25(16-9-19(32)11-20(33)10-16)28(37-29(21)26)15-3-7-18(31)8-4-15/h1-11,13,23,25,27-28,30-35H,12H2/t23-,25+,27+,28-/m1/s1

InChI Key

LYHUHVLRBIYLBQ-CJLVWDJLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gnetum gnemon	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-arylbenzofuran flavonoids. These are phenylpropanoids containing the 2-phenylbenzofuran moiety.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

2-arylbenzofuran flavonoids

Sub Class

Not Available

Direct Parent

2-arylbenzofuran flavonoids

Alternative Parents

Substituents

2-arylbenzofuran flavonoid
Furanoflavonoid or dihydroflavonoid
Linear 1,7-diphenylheptane skeleton
Flavan-3-ol
Hydroxyflavonoid
Neolignan skeleton
3-hydroxyflavonoid
7-hydroxyflavonoid
4'-hydroxyflavonoid
Flavan
1-phenylcoumaran
Stilbene
1-benzopyran
Benzopyran
Chromane
Coumaran
Resorcinol
Phenol
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
1-hydroxy-4-unsubstituted benzenoid
Monocyclic benzene moiety
Benzenoid
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Hydrocarbon derivative
Alcohol
Organooxygen compound
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163190489

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol (NP0150898)

MOL for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

3D MOL for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

3D SDF for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

3D-SDF for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

PDB for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

3D PDB for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

SMILES for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

INCHI for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

Structure for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)

3D Structure for NP0150898 ((4s,5s,11s,12r)-5-(3,5-dihydroxyphenyl)-4,11-bis(4-hydroxyphenyl)-3,10-dioxatricyclo[7.4.0.0²,⁶]trideca-1,6,8-triene-7,12-diol)