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Record Information
Version2.0
Created at2022-09-02 04:48:14 UTC
Updated at2022-09-02 04:48:14 UTC
NP-MRD IDNP0148976
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2s)-2-hydroxy-3-{[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}propyl (9z,12z,15z)-octadeca-9,12,15-trienoate
DescriptionGingerglycolipid a belongs to the class of organic compounds known as 1-acyl-3-o-beta-d-digalactosyl-sn-glycerols. These are glycosylmonoacylglycerols carrying a beta-D-digalactose at the 3-position of the glycerol moiety and a fatty acyl at the O-1 position of the glycerol moiety. Thus, gingerglycolipid a is considered to be a glycosylmonoradylglycerol. (2s)-2-hydroxy-3-{[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}propyl (9z,12z,15z)-octadeca-9,12,15-trienoate is found in Guapira graciliflora, Sonchus mauritanicus and Zingiber officinale. (2s)-2-hydroxy-3-{[(2r,3r,4s,5r,6r)-3,4,5-trihydroxy-6-({[(2s,3r,4s,5r,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}propyl (9z,12z,15z)-octadeca-9,12,15-trienoate was first documented in 2008 (PMID: 18338618). Based on a literature review a small amount of articles have been published on Gingerglycolipid a (PMID: 33922964) (PMID: 22322398).
Structure
Thumb
Synonyms
ValueSource
3'-O-Linolenoylglyceryl 6-O-galactopyranosyl-galactopyranosideMeSH
Chemical FormulaC33H56O14
Average Mass676.7970 Da
Monoisotopic Mass676.36701 Da
IUPAC Name(2S)-2-hydroxy-3-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}propyl (9Z,12Z,15Z)-octadeca-9,12,15-trienoate
Traditional Name(2S)-2-hydroxy-3-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-({[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}methyl)oxan-2-yl]oxy}propyl (9Z,12Z,15Z)-octadeca-9,12,15-trienoate
CAS Registry NumberNot Available
SMILES
CC\C=C/C\C=C/C\C=C/CCCCCCCC(=O)OC[C@@H](O)CO[C@@H]1O[C@H](CO[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H](O)[C@H]1O
InChI Identifier
InChI=1S/C33H56O14/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-25(36)43-19-22(35)20-44-32-31(42)29(40)27(38)24(47-32)21-45-33-30(41)28(39)26(37)23(18-34)46-33/h3-4,6-7,9-10,22-24,26-35,37-42H,2,5,8,11-21H2,1H3/b4-3-,7-6-,10-9-/t22-,23-,24-,26+,27+,28+,29+,30-,31-,32-,33+/m1/s1
InChI KeyMPSGDHOYFIUPSO-MDAKJLGTSA-N
Experimental Spectra
Not Available
Predicted Spectra
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Guapira gracilifloraLOTUS Database
Sonchus mauritanicusLOTUS Database
Zingiber officinaleLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 1-acyl-3-o-beta-d-digalactosyl-sn-glycerols. These are glycosylmonoacylglycerols carrying a beta-D-digalactose at the 3-position of the glycerol moiety and a fatty acyl at the O-1 position of the glycerol moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerolipids
Sub ClassGlycosylglycerols
Direct Parent1-acyl-3-O-beta-D-digalactosyl-sn-glycerols
Alternative Parents
Substituents
  • 1-acyl-3-o-beta-d-digalactosyl-sn-glycerol
  • Glycosylmonoacylglycerol
  • Glycosylmonoradylglycerol
  • Octadecanoid
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Fatty acid ester
  • Fatty acyl
  • Oxane
  • Carboxylic acid ester
  • Secondary alcohol
  • Organoheterocyclic compound
  • Oxacycle
  • Carboxylic acid derivative
  • Acetal
  • Monocarboxylic acid or derivatives
  • Polyol
  • Primary alcohol
  • Carbonyl group
  • Alcohol
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.3ALOGPS
logP1.34ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)11.9ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count13ChemAxon
Hydrogen Donor Count8ChemAxon
Polar Surface Area225.06 ŲChemAxon
Rotatable Bond Count23ChemAxon
Refractivity171.49 m³·mol⁻¹ChemAxon
Polarizability71.81 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8525018
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10349562
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Guevara L, Dominguez-Anaya MA, Ortigosa A, Gonzalez-Gordo S, Diaz C, Vicente F, Corpas FJ, Perez Del Palacio J, Palma JM: Identification of Compounds with Potential Therapeutic Uses from Sweet Pepper (Capsicum annuum L.) Fruits and Their Modulation by Nitric Oxide (NO). Int J Mol Sci. 2021 Apr 25;22(9). pii: ijms22094476. doi: 10.3390/ijms22094476. [PubMed:33922964 ]
  2. Passos Oliveira A, Raith M, Kuster RM, Rocha LM, Hamburger M, Potterat O: Metabolite profiling of the leaves of the Brazilian folk medicine Sideroxylon obtusifolium. Planta Med. 2012 May;78(7):703-10. doi: 10.1055/s-0031-1298269. Epub 2012 Feb 9. [PubMed:22322398 ]
  3. Lai GF, Luo SD, Cao JX, Wang YF: [Studies on chemical constituents from roots of Mirabilis jalapa]. Zhongguo Zhong Yao Za Zhi. 2008 Jan;33(1):42-6. [PubMed:18338618 ]
  4. LOTUS database [Link]