NP-MRD: Showing NP-Card for (2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid (NP0148786)

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Record Information

Version

2.0

Created at

2022-09-02 04:35:24 UTC

Updated at

2022-09-02 04:35:25 UTC

NP-MRD ID

NP0148786

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid

Description

Peneciraistin E belongs to the class of organic compounds known as indolecarboxylic acids. Indolecarboxylic acids are compounds containing a carboxylic acid group linked to an indole. (2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid is found in Penicillium raistrickii. Based on a literature review very few articles have been published on Peneciraistin E.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 38  0  0  0  0  0  0  0  0999 V2000
    5.1974   -0.6941    1.3784 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5770    0.4799    0.8872 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2751    0.3770    0.4173 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5656   -0.8131    0.4104 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2708   -0.8952   -0.0620 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6392    0.2332   -0.5497 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7455    0.0565   -1.0364 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.8111   -1.0166   -2.0652 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2544   -1.6030   -2.3811 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9778   -1.4076   -2.6956 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6924   -0.2262    0.0862 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0454   -1.3546    0.7925 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9811   -1.3279    1.8157 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5977   -0.1426    2.1613 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2293    0.9846    1.4383 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2981    0.9639    0.4186 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7852    2.0079   -0.4411 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3315    1.3084   -1.6279 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.5088    0.9162   -2.3058 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3265    1.4146   -0.5491 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6188    1.4889   -0.0758 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1380   -0.3577    1.8956 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4180   -1.3953    0.5447 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5313   -1.1324    2.1463 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0835   -1.6890    0.7979 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7637   -1.8641   -0.0398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0897   -1.1157   -3.6724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5574   -2.2970    0.5204 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2324   -2.2567    2.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3306   -0.0815    2.9508 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7020    1.9482    1.6878 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7627    3.0099   -0.2253 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6637    1.8809   -2.2660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2665    0.8191   -1.6844 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8215    2.2911   -0.9336 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1281    2.4416   -0.0915 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6 20  1  0
 20 21  2  0
  6  7  1  0
  7 18  1  0
 18 19  1  0
 18 17  1  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  2  0
 13 12  1  0
 12 11  2  0
  7  8  1  6
  8 10  1  0
  8  9  2  0
 21  3  1  0
 11  7  1  0
 11 16  1  0
  1 22  1  0
  1 23  1  0
  1 24  1  0
  4 25  1  0
  5 26  1  0
 20 35  1  0
 21 36  1  0
 18 33  1  6
 19 34  1  0
 17 32  1  0
 15 31  1  0
 14 30  1  0
 13 29  1  0
 12 28  1  0
 10 27  1  0
M  END


  Mrv1652309022206352D          

 21 23  0  0  1  0            999 V2000
    1.9960    3.6516    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4810    2.9842    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1454    2.2305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6303    1.5631    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2948    0.8094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4743    0.7232    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -0.0305    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4243    0.3820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2902   -0.0305    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.4243    1.2070    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387   -1.3654    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538   -0.6979    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1712   -0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9894    1.3906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3249    2.1443    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  1  0  0  0
  7  8  1  6  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
  7 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  7 18  1  0  0  0  0
 18 19  1  6  0  0  0
  6 20  1  0  0  0  0
 20 21  2  0  0  0  0
  3 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0148786

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(C=C1)[C@@]1([C@@H](O)NC2=CC=CC=C12)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C16H15NO4/c1-21-11-8-6-10(7-9-11)16(15(19)20)12-4-2-3-5-13(12)17-14(16)18/h2-9,14,17-18H,1H3,(H,19,20)/t14-,16-/m1/s1

> <INCHI_KEY>
MWMRIXJFSUUFML-GDBMZVCRSA-N

> <FORMULA>
C16H15NO4

> <MOLECULAR_WEIGHT>
285.299

> <EXACT_MASS>
285.100107967

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
29.069796880198467

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,3R)-2-hydroxy-3-(4-methoxyphenyl)-2,3-dihydro-1H-indole-3-carboxylic acid

> <ALOGPS_LOGP>
2.32

> <JCHEM_LOGP>
2.032487490333333

> <ALOGPS_LOGS>
-2.44

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
12.754585742873367

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.891760284659864

> <JCHEM_PKA_STRONGEST_BASIC>
-0.36066921382387207

> <JCHEM_POLAR_SURFACE_AREA>
78.79

> <JCHEM_REFRACTIVITY>
77.61590000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.04e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2R,3R)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       3.726   6.816   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       4.631   5.571   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       4.005   4.164   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.910   2.918   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.284   1.511   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.752   1.350   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       2.126  -0.057   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.792   0.713   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.542  -0.057   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       0.792   2.253   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       3.590  -0.533   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.924   0.237   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.258  -0.533   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.258  -2.073   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.924  -2.843   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.590  -2.073   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       2.126  -2.549   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0       1.220  -1.303   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -0.320  -1.303   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       1.847   2.596   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.473   4.003   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   21                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   20                                                  
CONECT    7    6    8   11   18                                             
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
CONECT   11    7   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11   17                                                  
CONECT   17   16   18                                                       
CONECT   18   17    7   19                                                  
CONECT   19   18                                                            
CONECT   20    6   21                                                       
CONECT   21   20    3                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   46    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₅NO₄

Average Mass

285.2990 Da

Monoisotopic Mass

285.10011 Da

IUPAC Name

(2R,3R)-2-hydroxy-3-(4-methoxyphenyl)-2,3-dihydro-1H-indole-3-carboxylic acid

Traditional Name

(2R,3R)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid

CAS Registry Number

Not Available

SMILES

COC1=CC=C(C=C1)[C@@]1([C@@H](O)NC2=CC=CC=C12)C(O)=O

InChI Identifier

InChI=1S/C16H15NO4/c1-21-11-8-6-10(7-9-11)16(15(19)20)12-4-2-3-5-13(12)17-14(16)18/h2-9,14,17-18H,1H3,(H,19,20)/t14-,16-/m1/s1

InChI Key

MWMRIXJFSUUFML-GDBMZVCRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Penicillium raistrickii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolecarboxylic acids. Indolecarboxylic acids are compounds containing a carboxylic acid group linked to an indole.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Indolecarboxylic acids and derivatives

Direct Parent

Indolecarboxylic acids

Alternative Parents

Substituents

Indolecarboxylic acid
Dihydroindole
Anisole
Phenoxy compound
Phenol ether
Methoxybenzene
Alkyl aryl ether
Beta-hydroxy acid
Secondary aliphatic/aromatic amine
Benzenoid
Monocyclic benzene moiety
Hydroxy acid
Amino acid or derivatives
Amino acid
Azacycle
Secondary amine
Alkanolamine
Carboxylic acid derivative
Carboxylic acid
Ether
Monocarboxylic acid or derivatives
Carbonyl group
Hydrocarbon derivative
Amine
Organic nitrogen compound
Organonitrogen compound
Organic oxygen compound
Organic oxide
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.32	ALOGPS
logP	2.03	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	3.89	ChemAxon
pKa (Strongest Basic)	-0.36	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	78.79 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	77.62 m³·mol⁻¹	ChemAxon
Polarizability	29.07 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

29214569

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

57342092

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid (NP0148786)

MOL for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

3D MOL for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

3D SDF for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

3D-SDF for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

PDB for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

3D PDB for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

SMILES for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

INCHI for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

Structure for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)

3D Structure for NP0148786 ((2r,3r)-2-hydroxy-3-(4-methoxyphenyl)-1,2-dihydroindole-3-carboxylic acid)