NP-MRD: Showing NP-Card for [(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid (NP0147306)

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Record Information

Version

2.0

Created at

2022-09-02 02:53:13 UTC

Updated at

2022-09-02 02:53:13 UTC

NP-MRD ID

NP0147306

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

Description

2-[(3R,5S)-5-[(2S,4R)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid belongs to the class of organic compounds known as benzene and substituted derivatives. These are aromatic compounds containing one monocyclic ring system consisting of benzene. Based on a literature review very few articles have been published on 2-[(3R,5S)-5-[(2S,4R)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022204532D          

 31 32  0  0  1  0            999 V2000
    3.7125   -0.9355    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1250   -1.6500    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7125   -2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8875   -2.3645    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4750   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  2 20  1  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309022204532D          

 31 32  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0147306

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CCCCCCCCC1=CC=CC=C1)C[C@H](C)C[C@@]1(C)C[C@](C)(CC(O)=O)OO1

> <INCHI_IDENTIFIER>
InChI=1S/C27H44O4/c1-22(14-10-7-5-6-8-11-15-24-16-12-9-13-17-24)18-23(2)19-26(3)21-27(4,31-30-26)20-25(28)29/h9,12-13,16-17,22-23H,5-8,10-11,14-15,18-21H2,1-4H3,(H,28,29)/t22-,23+,26+,27+/m1/s1

> <INCHI_KEY>
BXUWJKHPMWARGU-DTBHQADXSA-N

> <FORMULA>
C27H44O4

> <MOLECULAR_WEIGHT>
432.645

> <EXACT_MASS>
432.323959897

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
75

> <JCHEM_AVERAGE_POLARIZABILITY>
52.72132515626041

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(3R,5S)-5-[(2S,4R)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

> <ALOGPS_LOGP>
7.16

> <JCHEM_LOGP>
8.070265178333331

> <ALOGPS_LOGS>
-7.25

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.380369097798137

> <JCHEM_PKA_STRONGEST_BASIC>
-4.849745048605473

> <JCHEM_POLAR_SURFACE_AREA>
55.760000000000005

> <JCHEM_REFRACTIVITY>
125.46679999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.46e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[(3R,5S)-5-[(2S,4R)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       6.930  -1.746   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.700  -3.080   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.930  -4.414   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.390  -4.414   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.620  -3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.620  -5.747   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.080  -5.747   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.310  -7.081   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.770  -7.081   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000  -5.747   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.770  -4.414   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.770  -1.746   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000  -0.413   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.540  -0.413   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.310   0.921   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.540   2.255   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.000   2.255   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.770   0.921   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.240  -3.080   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.010  -4.414   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.603  -5.040   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      11.256  -3.508   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.502  -4.414   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      13.272  -3.080   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      13.909  -5.040   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.070  -6.572   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      15.476  -7.198   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      12.824  -7.477   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      12.026  -5.878   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      10.486  -5.878   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   20                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   19                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   14                                                       
CONECT   20    2   21                                                       
CONECT   21   20   22   23   31                                             
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25   26   30                                             
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   24   31                                                       
CONECT   31   30   21                                                       
MASTER        0    0    0    0    0    0    0    0   31    0   64    0
END

View in JSmol

Synonyms

Value	Source
2-[(3R,5S)-5-[(2S,4R)-2,4-Dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetate	Generator

Chemical Formula

C₂₇H₄₄O₄

Average Mass

432.6450 Da

Monoisotopic Mass

432.32396 Da

IUPAC Name

2-[(3R,5S)-5-[(2S,4R)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

Traditional Name

[(3R,5S)-5-[(2S,4R)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid

CAS Registry Number

Not Available

SMILES

C[C@H](CCCCCCCCC1=CC=CC=C1)C[C@H](C)C[C@@]1(C)C[C@](C)(CC(O)=O)OO1

InChI Identifier

InChI=1S/C27H44O4/c1-22(14-10-7-5-6-8-11-15-24-16-12-9-13-17-24)18-23(2)19-26(3)21-27(4,31-30-26)20-25(28)29/h9,12-13,16-17,22-23H,5-8,10-11,14-15,18-21H2,1-4H3,(H,28,29)/t22-,23+,26+,27+/m1/s1

InChI Key

BXUWJKHPMWARGU-DTBHQADXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzene and substituted derivatives. These are aromatic compounds containing one monocyclic ring system consisting of benzene.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Not Available

Direct Parent

Benzene and substituted derivatives

Alternative Parents

Substituents

Monocyclic benzene moiety
Ortho-dioxolane
Dialkyl peroxide
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.16	ALOGPS
logP	8.07	ChemAxon
logS	-7.2	ALOGPS
pKa (Strongest Acidic)	4.38	ChemAxon
pKa (Strongest Basic)	-4.8	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	55.76 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	125.47 m³·mol⁻¹	ChemAxon
Polarizability	52.72 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162918752

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid (NP0147306)

MOL for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D MOL for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D SDF for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D-SDF for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

PDB for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D PDB for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

SMILES for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

INCHI for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

Structure for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)

3D Structure for NP0147306 ([(3r,5s)-5-[(2s,4r)-2,4-dimethyl-12-phenyldodecyl]-3,5-dimethyl-1,2-dioxolan-3-yl]acetic acid)