NP-MRD: Showing NP-Card for (3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol (NP0146530)

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Record Information

Version

2.0

Created at

2022-09-02 01:56:44 UTC

Updated at

2022-09-02 01:56:44 UTC

NP-MRD ID

NP0146530

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol

Description

Abudinol B belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol is found in Ptilocaulis spiculifer. (3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol was first documented in 2007 (PMID: 17263384). Based on a literature review a small amount of articles have been published on Abudinol B (PMID: 20334383) (PMID: 18459096).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022203562D          

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M  END

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M  END


  Mrv1652309022203562D          

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    5.2925    1.0659    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9180    0.0267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1461   -0.2643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6307    0.3800    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8072    0.4281    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2313   -0.2795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4615   -0.3210    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6603   -0.5177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0069   -0.0140    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7304   -0.3841    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 14 13  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 14 23  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 11 25  1  0  0  0  0
 10 26  1  0  0  0  0
 26 27  1  0  0  0  0
 28 27  1  1  0  0  0
  8 28  1  0  0  0  0
 28 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  1  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
  2 33  1  0  0  0  0
 33 34  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0146530

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]12CC[C@@H]3OC(C)(C)[C@@H](O)CC[C@@]3(C)[C@@H]1CC\C2=C1\CC[C@@H]2OC(C)(C)[C@H](O)CC[C@@]2(C)C1

> <INCHI_IDENTIFIER>
InChI=1S/C30H50O4/c1-26(2)22(31)12-15-28(5)18-19(8-11-24(28)33-26)20-9-10-21-29(20,6)17-14-25-30(21,7)16-13-23(32)27(3,4)34-25/h21-25,31-32H,8-18H2,1-7H3/b20-19+/t21-,22-,23+,24+,25+,28+,29-,30+/m1/s1

> <INCHI_KEY>
QLATVJRWYRQNSO-YJTSMOIQSA-N

> <FORMULA>
C30H50O4

> <MOLECULAR_WEIGHT>
474.726

> <EXACT_MASS>
474.37091009

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
84

> <JCHEM_AVERAGE_POLARIZABILITY>
57.69892893238041

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3R,5aS,9aS)-7-[(3S,5aS,7aS,8E,10aR,10bS)-3-hydroxy-4,4,7a,10b-tetramethyl-dodecahydro-1H-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-decahydro-1-benzoxepin-3-ol

> <ALOGPS_LOGP>
4.94

> <JCHEM_LOGP>
5.036158080999998

> <ALOGPS_LOGS>
-5.24

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.311339541124326

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.709279549795838

> <JCHEM_PKA_STRONGEST_BASIC>
-3.231690396438796

> <JCHEM_POLAR_SURFACE_AREA>
58.92

> <JCHEM_REFRACTIVITY>
136.6181

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.75e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(3R,5aS,9aS)-7-[(3S,5aS,7aS,8E,10aR,10bS)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1H-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3H-1-benzoxepin-3-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.703   2.890   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.012   1.514   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.508   1.146   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.176   2.493   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.682   2.175   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.529   3.462   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.066   3.372   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.757   1.996   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.734   3.187   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.242   1.588   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.445   2.550   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.213   4.073   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.416   5.035   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.850   4.474   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      11.896   5.605   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      13.432   5.492   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      13.200   7.014   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      14.865   6.056   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      14.301   4.221   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      15.824   4.452   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      13.849   2.748   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      12.417   2.184   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      11.082   2.952   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.199   1.416   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.879   1.990   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       7.314   0.050   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.873  -0.493   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.911   0.709   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       3.373   0.799   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.165  -0.522   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       2.728  -0.599   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       1.232  -0.966   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.013  -0.026   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -1.363  -0.717   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4   33                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   28                                             
CONECT    9    8                                                            
CONECT   10    8   11   26                                                  
CONECT   11   10   12   25                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   23                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18   19                                             
CONECT   17   16                                                            
CONECT   18   16                                                            
CONECT   19   16   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   14   24   25                                             
CONECT   24   23                                                            
CONECT   25   23   11                                                       
CONECT   26   10   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27    8   29                                                  
CONECT   29   28    5   30   31                                             
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32    2   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₀H₅₀O₄

Average Mass

474.7260 Da

Monoisotopic Mass

474.37091 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@]12CC[C@@H]3OC(C)(C)[C@@H](O)CC[C@@]3(C)[C@@H]1CC\C2=C1\CC[C@@H]2OC(C)(C)[C@H](O)CC[C@@]2(C)C1

InChI Identifier

InChI=1S/C30H50O4/c1-26(2)22(31)12-15-28(5)18-19(8-11-24(28)33-26)20-9-10-21-29(20,6)17-14-25-30(21,7)16-13-23(32)27(3,4)34-25/h21-25,31-32H,8-18H2,1-7H3/b20-19+/t21-,22-,23+,24+,25+,28+,29-,30+/m1/s1

InChI Key

QLATVJRWYRQNSO-YJTSMOIQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ptilocaulis spiculifer	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Oxepane
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

10344979

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

15513425

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Boone MA, Tong R, McDonald FE, Lense S, Cao R, Hardcastle KI: Biomimetic syntheses from squalene-like precursors: synthesis of ent-abudinol B and reassessment of the structure of muzitone. J Am Chem Soc. 2010 Apr 14;132(14):5300-8. doi: 10.1021/ja1006806. [PubMed:20334383 ]
Tong R, McDonald FE: Mimicking biosynthesis: total synthesis of the triterpene natural product abudinol B from a squalene-like precursor. Angew Chem Int Ed Engl. 2008;47(23):4377-9. doi: 10.1002/anie.200800749. [PubMed:18459096 ]
Tong R, Valentine JC, McDonald FE, Cao R, Fang X, Hardcastle KI: Total syntheses of durgamone, nakorone, and abudinol B via biomimetic oxa- and carbacyclizations. J Am Chem Soc. 2007 Feb 7;129(5):1050-1. doi: 10.1021/ja068826+. [PubMed:17263384 ]
LOTUS database [Link]

Showing NP-Card for (3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol (NP0146530)

MOL for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

3D MOL for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

3D SDF for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

3D-SDF for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

PDB for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

3D PDB for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

SMILES for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

INCHI for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

Structure for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)

3D Structure for NP0146530 ((3r,5as,9as)-7-[(3s,5as,7as,8e,10ar,10bs)-3-hydroxy-4,4,7a,10b-tetramethyl-octahydro-1h-indeno[5,4-b]oxepin-8-ylidene]-2,2,5a-trimethyl-hexahydro-3h-1-benzoxepin-3-ol)