NP-MRD: Showing NP-Card for 1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one (NP0145817)

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Record Information

Version

2.0

Created at

2022-09-02 01:05:38 UTC

Updated at

2022-09-02 01:05:39 UTC

NP-MRD ID

NP0145817

Secondary Accession Numbers

None

Natural Product Identification

Common Name

1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one

Description

1,6,12,13-Tetrahydroxy-3-[(1H-indol-3-yl)methyl]-4,5,10-trimethyl-3H,6H,6aH,9H,10H,11H,12H,13H,14H,15H,15bH-cycloundeca[e]isoindol-15-one belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone. 1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one is found in Pseudeurotium zonatum. 1,6,12,13-Tetrahydroxy-3-[(1H-indol-3-yl)methyl]-4,5,10-trimethyl-3H,6H,6aH,9H,10H,11H,12H,13H,14H,15H,15bH-cycloundeca[e]isoindol-15-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004261503282D          

 36 40  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1533004261503282D          

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 10 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 15 23  1  0  0  0  0
 18 23  1  0  0  0  0
 13 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
  6 27  1  0  0  0  0
 12 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
  2 35  1  0  0  0  0
  9 36  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0145817

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1CC=CC2C(O)C(C)=C(C)C3C(CC4=CNC5=CC=CC=C45)NC(=O)C23C(=O)CC(O)C(O)C1

> <INCHI_IDENTIFIER>
InChI=1S/C29H36N2O5/c1-15-7-6-9-20-27(35)17(3)16(2)26-22(12-18-14-30-21-10-5-4-8-19(18)21)31-28(36)29(20,26)25(34)13-24(33)23(32)11-15/h4-6,8-10,14-15,20,22-24,26-27,30,32-33,35H,7,11-13H2,1-3H3,(H,31,36)

> <INCHI_KEY>
XJDXKIUXELETKN-UHFFFAOYSA-N

> <FORMULA>
C29H36N2O5

> <MOLECULAR_WEIGHT>
492.616

> <EXACT_MASS>
492.262422267

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
72

> <JCHEM_AVERAGE_POLARIZABILITY>
53.773931747926305

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6,12,13-trihydroxy-3-[(1H-indol-3-yl)methyl]-4,5,10-trimethyl-1H,2H,3H,6H,6aH,9H,10H,11H,12H,13H,14H,15H,15bH-cycloundeca[e]isoindole-1,15-dione

> <ALOGPS_LOGP>
2.51

> <JCHEM_LOGP>
2.3407557236666667

> <ALOGPS_LOGS>
-3.65

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.000706697518464

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.613189872172129

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5638627608589633

> <JCHEM_POLAR_SURFACE_AREA>
122.65

> <JCHEM_REFRACTIVITY>
138.637

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.11e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
6,12,13-trihydroxy-3-(1H-indol-3-ylmethyl)-4,5,10-trimethyl-2H,3H,6H,6aH,9H,10H,11H,12H,13H,14H,15bH-cycloundeca[e]isoindole-1,15-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 26-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-APR-15         0                                  
HETATM    1  C   UNK     0      12.189   1.268   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.755   2.102   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.474   0.588   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.947   0.388   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.285   1.778   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.757   2.490   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.535   1.553   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       5.506  -0.052   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       4.113   2.143   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.912   3.670   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.356   4.068   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.134   4.607   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.256   6.142   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.997   7.166   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.366   8.657   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.374   9.835   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       4.188  11.142   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0       5.683  10.772   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       6.958  11.635   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.343  10.963   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.453   9.427   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.178   8.563   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.793   9.236   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0       6.753   6.501   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0       7.125   5.245   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       8.931   5.424   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       6.557   4.017   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.779   4.954   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       8.251   6.652   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       9.201   4.364   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.423   5.302   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      11.038   6.861   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      11.846   4.712   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      13.180   5.630   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      12.047   3.185   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.801   1.135   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   35                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   27                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   36                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   27                                                  
CONECT   13   12   14   24                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   23                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   23                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   15   18                                                  
CONECT   24   13   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25    6   12   28                                             
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33    2                                                       
CONECT   36    9                                                            
MASTER        0    0    0    0    0    0    0    0   36    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₃₆N₂O₅

Average Mass

492.6160 Da

Monoisotopic Mass

492.26242 Da

IUPAC Name

6,12,13-trihydroxy-3-[(1H-indol-3-yl)methyl]-4,5,10-trimethyl-1H,2H,3H,6H,6aH,9H,10H,11H,12H,13H,14H,15H,15bH-cycloundeca[e]isoindole-1,15-dione

Traditional Name

6,12,13-trihydroxy-3-(1H-indol-3-ylmethyl)-4,5,10-trimethyl-2H,3H,6H,6aH,9H,10H,11H,12H,13H,14H,15bH-cycloundeca[e]isoindole-1,15-dione

CAS Registry Number

Not Available

SMILES

CC1CC=CC2C(O)C(C)=C(C)C3C(CC4=CNC5=CC=CC=C45)NC(=O)C23C(=O)CC(O)C(O)C1

InChI Identifier

InChI=1S/C29H36N2O5/c1-15-7-6-9-20-27(35)17(3)16(2)26-22(12-18-14-30-21-10-5-4-8-19(18)21)31-28(36)29(20,26)25(34)13-24(33)23(32)11-15/h4-6,8-10,14-15,20,22-24,26-27,30,32-33,35H,7,11-13H2,1-3H3,(H,31,36)

InChI Key

XJDXKIUXELETKN-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pseudeurotium zonatum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isoindoles and derivatives

Sub Class

Isoindolines

Direct Parent

Isoindolones

Alternative Parents

Substituents

Isoindolone
3-alkylindole
Indole
Indole or derivatives
Isoindole
Substituted pyrrole
Benzenoid
Pyrrole
Pyrroline
Heteroaromatic compound
Cyclic carboximidic acid
Secondary alcohol
Ketone
Polyol
Azacycle
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Carbonyl group
Hydrocarbon derivative
Alcohol
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Organic oxygen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.51	ALOGPS
logP	2.34	ChemAxon
logS	-3.6	ALOGPS
pKa (Strongest Acidic)	12.61	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	122.65 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	138.64 m³·mol⁻¹	ChemAxon
Polarizability	53.77 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

73807413

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one (NP0145817)

MOL for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

3D MOL for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

3D SDF for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

3D-SDF for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

PDB for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

3D PDB for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

SMILES for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

INCHI for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

Structure for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)

3D Structure for NP0145817 (1,6,12,13-tetrahydroxy-3-(1h-indol-3-ylmethyl)-4,5,10-trimethyl-3h,3ah,6h,6ah,9h,10h,11h,12h,13h,14h-cycloundeca[d]isoindol-15-one)