NP-MRD: Showing NP-Card for (2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate (NP0145593)

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Record Information

Version

2.0

Created at

2022-09-02 00:49:32 UTC

Updated at

2022-09-02 00:49:32 UTC

NP-MRD ID

NP0145593

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

Description

Acetylannulatophenonoside belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose. (2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate is found in Hypericum annulatum. (2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate was first documented in 2006 (PMID: 16848749). Based on a literature review a small amount of articles have been published on Acetylannulatophenonoside (PMID: 17260692) (PMID: 22077203).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022202492D          

 30 32  0  0  1  0            999 V2000
    2.7512    3.1152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512    2.2902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.0527    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7982    0.5678    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0136    0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4005    0.2707    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0531   -0.2169    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8781   -0.2169    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3631   -0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1836   -0.7981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5191   -0.0444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3396    0.0418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8245   -0.6256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4890   -1.3793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9739   -2.0467    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6685   -1.4655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -2.2192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8178   -2.8866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5124   -2.3054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1769   -3.0591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3564   -3.1453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0208   -3.8990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8715   -2.4779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2070   -1.7242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7221   -1.0568    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0275   -1.6380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1331    0.5678    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9177    0.8227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  1  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  2  0  0  0  0
 21 28  1  0  0  0  0
 10 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  1  0  0  0
M  END

     RDKit          3D

 50 52  0  0  0  0  0  0  0  0999 V2000
    5.5708   -2.7349   -0.0767 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7138   -1.6054   -0.5469 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2493   -0.6049   -1.0719 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3303   -1.6302   -0.4187 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5629   -0.5580   -0.8682 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5030   -0.9534   -1.8696 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0213   -0.9711   -3.2779 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0451   -1.4613   -4.1376 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3967   -0.1892   -1.6524 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6420    0.7434   -0.6488 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5162    1.0457    0.0400 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0750    2.2657    0.3332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4665    3.4587   -0.0815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0184    4.6857    0.2170 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1889    4.7738    0.9346 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8015    3.6170    1.3494 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9811    3.6723    2.0737 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2461    2.3567    1.0487 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9420    1.2031    1.5827 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7876    1.3590    2.5473 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7939   -0.1562    1.1420 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8026   -1.1715    2.0757 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7302   -2.4951    1.7338 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7444   -3.4726    2.7408 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6436   -2.8548    0.3956 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6334   -1.8672   -0.5557 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5472   -2.2239   -1.8859 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7092   -0.5343   -0.1731 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6485   -0.0116    0.2373 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3147    0.8455    1.0840 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0926   -3.7124   -0.2972 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5476   -2.6863   -0.6083 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7937   -2.6589    1.0149 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1409    0.2711   -1.3118 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2359   -2.0202   -1.6097 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3358    0.0304   -3.6303 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9265   -1.6437   -3.2674 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9740   -2.4528   -4.0883 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1796    1.6242   -1.0075 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4552    3.4457   -0.6491 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5002    5.5768   -0.1316 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6260    5.7307    1.1721 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3680    4.5804    2.2818 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8700   -0.8816    3.1218 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6894   -4.4455    2.4583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5869   -3.9185    0.1414 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4117   -2.3924   -2.4173 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7339    0.2255   -0.9654 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1074   -0.8241    0.7197 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6264    1.6203    0.5183 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 16 18  2  0
 18 19  1  0
 19 20  2  0
 19 21  1  0
 21 22  2  0
 22 23  1  0
 23 24  1  0
 23 25  2  0
 25 26  1  0
 26 27  1  0
 26 28  2  0
 10 29  1  0
 29 30  1  0
 29  5  1  0
 18 12  1  0
 28 21  1  0
  1 31  1  0
  1 32  1  0
  1 33  1  0
  5 34  1  6
  6 35  1  1
  7 36  1  0
  7 37  1  0
  8 38  1  0
 10 39  1  6
 13 40  1  0
 14 41  1  0
 15 42  1  0
 17 43  1  0
 22 44  1  0
 24 45  1  0
 25 46  1  0
 27 47  1  0
 28 48  1  0
 29 49  1  1
 30 50  1  0
M  END


  Mrv1652309022202492D          

 30 32  0  0  1  0            999 V2000
    2.7512    3.1152    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7512    2.2902    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0367    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.8777    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4656    1.0527    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.7982    0.5678    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0136    0.8227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4005    0.2707    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.0531   -0.2169    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8781   -0.2169    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3631   -0.8843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1836   -0.7981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5191   -0.0444    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3396    0.0418    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8245   -0.6256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4890   -1.3793    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9739   -2.0467    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6685   -1.4655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -2.2192    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8178   -2.8866    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5124   -2.3054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1769   -3.0591    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3564   -3.1453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0208   -3.8990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8715   -2.4779    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2070   -1.7242    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7221   -1.0568    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0275   -1.6380    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1331    0.5678    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9177    0.8227    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  0  0  0  0
  6  7  1  1  0  0  0
  7  8  1  0  0  0  0
  6  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 12 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  2  0  0  0  0
 21 28  1  0  0  0  0
 10 29  1  0  0  0  0
  5 29  1  0  0  0  0
 29 30  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0145593

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1[C@H](CO)O[C@@H](OC2=CC=CC(O)=C2C(=O)C2=CC(O)=CC(O)=C2)[C@@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C20H20O10/c1-9(22)28-19-15(8-21)30-20(18(19)27)29-14-4-2-3-13(25)16(14)17(26)10-5-11(23)7-12(24)6-10/h2-7,15,18-21,23-25,27H,8H2,1H3/t15-,18+,19-,20+/m0/s1

> <INCHI_KEY>
JIHSBTHAIOXQHV-JOCLIGHLSA-N

> <FORMULA>
C20H20O10

> <MOLECULAR_WEIGHT>
420.37

> <EXACT_MASS>
420.105646844

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
50

> <JCHEM_AVERAGE_POLARIZABILITY>
39.29580039268266

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3R,4R,5S)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

> <ALOGPS_LOGP>
1.17

> <JCHEM_LOGP>
1.6717298256666666

> <ALOGPS_LOGS>
-2.64

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
8.618952018772866

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.163827952270658

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9818692120661687

> <JCHEM_POLAR_SURFACE_AREA>
162.98000000000002

> <JCHEM_REFRACTIVITY>
99.89050000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.61e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3R,4R,5S)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       5.136   5.815   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.136   4.275   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       3.802   3.505   0.000  0.00  0.00           O+0
HETATM    4  O   UNK     0       6.469   3.505   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.469   1.965   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.223   1.060   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.759   1.536   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       2.614   0.505   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0       5.699  -0.405   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       7.239  -0.405   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       8.144  -1.651   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       9.676  -1.490   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.302  -0.083   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.834   0.078   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.739  -1.168   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.113  -2.575   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      13.018  -3.821   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      10.581  -2.736   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.955  -4.142   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      10.860  -5.388   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       8.423  -4.303   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.797  -5.710   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.265  -5.871   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       5.639  -7.278   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       5.360  -4.625   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.986  -3.219   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       5.081  -1.973   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       7.518  -3.058   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.715   1.060   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       9.180   1.536   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   29                                                  
CONECT    6    5    7    9                                                  
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11   29                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   18                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   12   19                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   28                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   21                                                       
CONECT   29   10    5   30                                                  
CONECT   30   29                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₀O₁₀

Average Mass

420.3700 Da

Monoisotopic Mass

420.10565 Da

IUPAC Name

(2S,3R,4R,5S)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

Traditional Name

(2S,3R,4R,5S)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1[C@H](CO)O[C@@H](OC2=CC=CC(O)=C2C(=O)C2=CC(O)=CC(O)=C2)[C@@H]1O

InChI Identifier

InChI=1S/C20H20O10/c1-9(22)28-19-15(8-21)30-20(18(19)27)29-14-4-2-3-13(25)16(14)17(26)10-5-11(23)7-12(24)6-10/h2-7,15,18-21,23-25,27H,8H2,1H3/t15-,18+,19-,20+/m0/s1

InChI Key

JIHSBTHAIOXQHV-JOCLIGHLSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hypericum annulatum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenolic glycosides. These are organic compounds containing a phenolic structure attached to a glycosyl moiety. Some examples of phenolic structures include lignans, and flavonoids. Among the sugar units found in natural glycosides are D-glucose, L-Fructose, and L rhamnose.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Phenolic glycosides

Alternative Parents

Substituents

Phenolic glycoside
Benzophenone
Aryl-phenylketone
Diphenylmethane
O-glycosyl compound
Pentose monosaccharide
Phenoxy compound
Aryl ketone
Resorcinol
Phenol ether
Benzoyl
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Monosaccharide
Monocyclic benzene moiety
Vinylogous acid
Tetrahydrofuran
Secondary alcohol
Ketone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Acetal
Organic oxide
Hydrocarbon derivative
Primary alcohol
Carbonyl group
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.17	ALOGPS
logP	1.67	ChemAxon
logS	-2.6	ALOGPS
pKa (Strongest Acidic)	7.16	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	9	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	162.98 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	99.89 m³·mol⁻¹	ChemAxon
Polarizability	39.3 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102463820

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Zheleva-Dimitrova D, Gevrenova R, Nedialkov P, Kitanov G: Simultaneous determination of benzophenones and gentisein in Hypericum annulatum Moris by high-performance liquid chromatography. Phytochem Anal. 2007 Jan-Feb;18(1):1-6. doi: 10.1002/pca.940. [PubMed:17260692 ]
Momekov G, Nedialkov PT, Kitanov GM, Zh Zheleva-Dimitrova D, Tzanova T, Girreser U, Karaivanova M: Cytoprotective effects of 5 benzophenones and a xanthone from Hypericum annulatum in models of epirubicin-induced cytotoxicity: SAR-analysis and mechanistic investigations. Med Chem. 2006 Jul;2(4):377-84. doi: 10.2174/157340606777724103. [PubMed:16848749 ]
Zheleva-Dimitrova D, Nedialkov P, Girreser U, Kitanov G: Benzophenones and flavonoids from Hypericum maculatum and their antioxidant activities. Nat Prod Res. 2012;26(17):1576-83. doi: 10.1080/14786419.2011.582468. Epub 2011 Nov 11. [PubMed:22077203 ]
LOTUS database [Link]

Showing NP-Card for (2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate (NP0145593)

MOL for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D MOL for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D SDF for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D-SDF for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

PDB for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D PDB for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

SMILES for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

INCHI for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

Structure for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)

3D Structure for NP0145593 ((2s,3r,4r,5s)-5-[2-(3,5-dihydroxybenzoyl)-3-hydroxyphenoxy]-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl acetate)