NP-MRD: Showing NP-Card for (2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate (NP0145015)

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Record Information

Version

2.0

Created at

2022-09-02 00:07:07 UTC

Updated at

2022-09-02 00:07:07 UTC

NP-MRD ID

NP0145015

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate

Description

(2S,4aR,5R,8aR)-5-{[(6,8-dimethoxy-2-oxo-2H-chromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-decahydronaphthalen-2-yl acetate belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). (2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate is found in Achillea pseudopectinata. Based on a literature review very few articles have been published on (2S,4aR,5R,8aR)-5-{[(6,8-dimethoxy-2-oxo-2H-chromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-decahydronaphthalen-2-yl acetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022202072D          

 35 38  0  0  1  0            999 V2000
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M  END

     RDKit          3D

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M  END


  Mrv1652309022202072D          

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  2 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 22 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 28 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  0  0  0  0
 26 32  1  0  0  0  0
 32 33  2  0  0  0  0
 21 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0145015

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(OC[C@@H]2C(=C)CC[C@H]3C(C)(C)[C@H](CC[C@@]23C)OC(C)=O)C(OC)=C2OC(=O)C=CC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C28H36O7/c1-16-8-10-21-27(3,4)22(34-17(2)29)12-13-28(21,5)19(16)15-33-25-20(31-6)14-18-9-11-23(30)35-24(18)26(25)32-7/h9,11,14,19,21-22H,1,8,10,12-13,15H2,2-7H3/t19-,21+,22+,28+/m1/s1

> <INCHI_KEY>
DZBRQMXDWRVJOD-IAELEKMMSA-N

> <FORMULA>
C28H36O7

> <MOLECULAR_WEIGHT>
484.589

> <EXACT_MASS>
484.246103499

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
52.623785988503414

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2S,4aR,5R,8aR)-5-{[(6,8-dimethoxy-2-oxo-2H-chromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-decahydronaphthalen-2-yl acetate

> <ALOGPS_LOGP>
5.40

> <JCHEM_LOGP>
4.460879671666667

> <ALOGPS_LOGS>
-5.76

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.47598824195629

> <JCHEM_POLAR_SURFACE_AREA>
80.29

> <JCHEM_REFRACTIVITY>
131.6721

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
8.46e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2S,4aR,5R,8aR)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2H-naphthalen-2-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000  -7.700   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -5.861  -6.067   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -6.851  -4.353   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -6.668  -2.310   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -8.002   0.000   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -5.335   0.000   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -1.334  -3.850   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0       8.002  -3.080   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0       5.335  -3.080   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       2.667  -4.620   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   18                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   16                                                  
CONECT    6    5    7    8    9                                             
CONECT    7    6                                                            
CONECT    8    6                                                            
CONECT    9    6   10   14                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    9   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15    5   17   18                                             
CONECT   17   16                                                            
CONECT   18   16    2   19                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22   33                                                  
CONECT   22   21   23   25                                                  
CONECT   23   22   24                                                       
CONECT   24   23                                                            
CONECT   25   22   26                                                       
CONECT   26   25   27   32                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32                                                       
CONECT   32   31   26   33                                                  
CONECT   33   32   21   34                                                  
CONECT   34   33   35                                                       
CONECT   35   34                                                            
MASTER        0    0    0    0    0    0    0    0   35    0   76    0
END

View in JSmol

Synonyms

Value	Source
(2S,4AR,5R,8ar)-5-{[(6,8-dimethoxy-2-oxo-2H-chromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-decahydronaphthalen-2-yl acetic acid	Generator

Chemical Formula

C₂₈H₃₆O₇

Average Mass

484.5890 Da

Monoisotopic Mass

484.24610 Da

IUPAC Name

(2S,4aR,5R,8aR)-5-{[(6,8-dimethoxy-2-oxo-2H-chromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-decahydronaphthalen-2-yl acetate

Traditional Name

(2S,4aR,5R,8aR)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2H-naphthalen-2-yl acetate

CAS Registry Number

Not Available

SMILES

COC1=C(OC[C@@H]2C(=C)CC[C@H]3C(C)(C)[C@H](CC[C@@]23C)OC(C)=O)C(OC)=C2OC(=O)C=CC2=C1

InChI Identifier

InChI=1S/C28H36O7/c1-16-8-10-21-27(3,4)22(34-17(2)29)12-13-28(21,5)19(16)15-33-25-20(31-6)14-18-9-11-23(30)35-24(18)26(25)32-7/h9,11,14,19,21-22H,1,8,10,12-13,15H2,2-7H3/t19-,21+,22+,28+/m1/s1

InChI Key

DZBRQMXDWRVJOD-IAELEKMMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Achillea pseudopectinata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Not Available

Direct Parent

Coumarins and derivatives

Alternative Parents

Substituents

Coumarin
Benzopyran
1-benzopyran
Anisole
Alkyl aryl ether
Pyranone
Benzenoid
Pyran
Heteroaromatic compound
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Ether
Monocarboxylic acid or derivatives
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.4	ALOGPS
logP	4.46	ChemAxon
logS	-5.8	ALOGPS
pKa (Strongest Basic)	-4.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	80.29 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	131.67 m³·mol⁻¹	ChemAxon
Polarizability	52.62 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162997416

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate (NP0145015)

MOL for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

3D MOL for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

3D SDF for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

3D-SDF for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

PDB for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

3D PDB for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

SMILES for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

INCHI for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

Structure for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)

3D Structure for NP0145015 ((2s,4ar,5r,8ar)-5-{[(6,8-dimethoxy-2-oxochromen-7-yl)oxy]methyl}-1,1,4a-trimethyl-6-methylidene-hexahydro-2h-naphthalen-2-yl acetate)