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Record Information
Version2.0
Created at2022-09-02 00:01:51 UTC
Updated at2022-09-02 00:01:51 UTC
NP-MRD IDNP0144939
Secondary Accession NumbersNone
Natural Product Identification
Common Name3-{[(2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromen-4-one
DescriptionQuercetin 3-O-[beta-D-xylosyl-(1->2)-beta-D-glucoside], also known as quercetin 3-sambubioside, belongs to the class of organic compounds known as flavonoid-3-o-glycosides. These are phenolic compounds containing a flavonoid moiety which is O-glycosidically linked to carbohydrate moiety at the C3-position. 3-{[(2s,3r,4s,5s,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2s,3r,4s,5r)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromen-4-one is found in Actinidia arguta, Aesculus chinensis, Aesculus hippocastanum, Eriobotrya japonica, Eucommia ulmoides, Euphorbia prostrata, Ilex pernyi, Lathyrus chloranthus, Nelumbo nucifera, Oldenlandia herbacea, Phyllanthus niruri and Quercus canariensis. Quercetin 3-O-[beta-D-xylosyl-(1->2)-beta-D-glucoside] is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3-((2-O-beta-D-xylopyranosyl-beta-D-glucopyranosyl)oxy)-4H-1-benzopyran-4-oneChEBI
Quercetin 3-sambubiosideChEBI
2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3-((2-O-b-D-xylopyranosyl-b-D-glucopyranosyl)oxy)-4H-1-benzopyran-4-oneGenerator
2-(3,4-Dihydroxyphenyl)-5,7-dihydroxy-3-((2-O-β-D-xylopyranosyl-β-D-glucopyranosyl)oxy)-4H-1-benzopyran-4-oneGenerator
Quercetin 3-O-[b-D-xylosyl-(1->2)-b-D-glucoside]Generator
Quercetin 3-O-[β-D-xylosyl-(1->2)-β-D-glucoside]Generator
Quercetin 3-O-beta-xylopyranosyl-(1-2)-O-beta-glucopyranosideMeSH
Quercetin 3-O-beta-D-xylopyranosyl-(1->2)-beta-D-glucopyranosidePhytoBank
Quercetin 3-O-β-D-xylopyranosyl-(1→2)-β-D-glucopyranosidePhytoBank
Quercetin 3-O-beta-D-xylopyranosyl-(1→2)-beta-D-glucopyranosidePhytoBank
Quercetin 3-O-beta-xylopyranosyl-(1->2)-beta-glucopyranosidePhytoBank
Quercetin 3-O-β-xylopyranosyl-(1→2)-β-glucopyranosidePhytoBank
Quercetin 3-O-beta-xylopyranosyl-(1→2)-beta-glucopyranosidePhytoBank
Quercetin 3-O-sambubiosidePhytoBank
Chemical FormulaC26H28O16
Average Mass596.4940 Da
Monoisotopic Mass596.13773 Da
IUPAC Name3-{[(2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one
Traditional Name3-{[(2S,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-{[(2S,3R,4S,5R)-3,4,5-trihydroxyoxan-2-yl]oxy}oxan-2-yl]oxy}-2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromen-4-one
CAS Registry NumberNot Available
SMILES
OC[C@H]1O[C@@H](OC2=C(OC3=CC(O)=CC(O)=C3C2=O)C2=CC(O)=C(O)C=C2)[C@H](O[C@@H]2OC[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@@H]1O
InChI Identifier
InChI=1S/C26H28O16/c27-6-15-18(34)20(36)24(42-25-21(37)17(33)13(32)7-38-25)26(40-15)41-23-19(35)16-12(31)4-9(28)5-14(16)39-22(23)8-1-2-10(29)11(30)3-8/h1-5,13,15,17-18,20-21,24-34,36-37H,6-7H2/t13-,15-,17+,18-,20+,21-,24-,25+,26+/m1/s1
InChI KeyNKFZLEYLWAFYEH-CJNLAGEVSA-N
Experimental Spectra
Not Available
Predicted Spectra
Chemical Shift Submissions
Not Available
Species
Species of Origin
Chemical Taxonomy
Description Belongs to the class of organic compounds known as flavonoid-3-o-glycosides. These are phenolic compounds containing a flavonoid moiety which is O-glycosidically linked to carbohydrate moiety at the C3-position.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassFlavonoids
Sub ClassFlavonoid glycosides
Direct ParentFlavonoid-3-O-glycosides
Alternative Parents
Substituents
  • Flavonoid-3-o-glycoside
  • 3'-hydroxyflavonoid
  • 4'-hydroxyflavonoid
  • 5-hydroxyflavonoid
  • 7-hydroxyflavonoid
  • Flavone
  • Hydroxyflavonoid
  • Chromone
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Benzopyran
  • 1-benzopyran
  • Catechol
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Pyranone
  • Oxane
  • Monocyclic benzene moiety
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous acid
  • Secondary alcohol
  • Organoheterocyclic compound
  • Oxacycle
  • Acetal
  • Polyol
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Alcohol
  • Organic oxygen compound
  • Primary alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.23ALOGPS
logP-1.3ChemAxon
logS-2ALOGPS
pKa (Strongest Acidic)6.37ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count16ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area265.52 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity135.73 m³·mol⁻¹ChemAxon
Polarizability55.25 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4589464
KEGG Compound IDC12637
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5487635
PDB IDNot Available
ChEBI ID32081
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]