NP-MRD: Showing NP-Card for (1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate (NP0144729)

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Record Information

Version

2.0

Created at

2022-09-01 23:46:28 UTC

Updated at

2022-09-01 23:46:28 UTC

NP-MRD ID

NP0144729

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate

Description

Cardiopetamine belongs to the class of organic compounds known as hetisine-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hetisine skeleton, which is a heptacyclic compound with an additional N-C-6 bond as compared with the hetidine-type, and thus, is one of most complex entries in the atisane-class. (1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate is found in Aconitum napellus, Delphinium gracile and Delphinium verdunense. (1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate was first documented in 1998 (PMID: 10554234). Based on a literature review very few articles have been published on Cardiopetamine.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309022201462D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309022201462D          

 33 40  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0144729

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@@]12CN3[C@H]4C[C@@]56[C@H]7[C@@H]3[C@@](CC(=O)C1)([C@@H]24)[C@@H]5[C@H](OC(=O)C1=CC=CC=C1)[C@H]([C@@H]7O)C(=C)[C@H]6O

> <INCHI_IDENTIFIER>
InChI=1S/C27H29NO5/c1-12-16-18(30)17-22-27-9-14(29)8-25(2)11-28(22)15(20(25)27)10-26(17,23(12)31)21(27)19(16)33-24(32)13-6-4-3-5-7-13/h3-7,15-23,30-31H,1,8-11H2,2H3/t15-,16-,17+,18-,19+,20+,21+,22+,23+,25-,26+,27-/m0/s1

> <INCHI_KEY>
JLPNEAKFLNGJNM-HVBPDPATSA-N

> <FORMULA>
C27H29NO5

> <MOLECULAR_WEIGHT>
447.531

> <EXACT_MASS>
447.204573038

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
62

> <JCHEM_AVERAGE_POLARIZABILITY>
47.19544722636497

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,5R,8R,9S,10R,11S,13R,14S,16S,17R,18S,19S)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-19-yl benzoate

> <ALOGPS_LOGP>
0.93

> <JCHEM_LOGP>
0.7051324513333335

> <ALOGPS_LOGS>
-2.76

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
14.638260024257853

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.954230628517141

> <JCHEM_PKA_STRONGEST_BASIC>
8.23201118381846

> <JCHEM_POLAR_SURFACE_AREA>
87.07000000000001

> <JCHEM_REFRACTIVITY>
118.61400000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
7.86e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(1S,5R,8R,9S,10R,11S,13R,14S,16S,17R,18S,19S)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-19-yl benzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 02-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   02-SEP-22         0                                  
HETATM    1  C   UNK     0      -2.121  -0.922   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -0.469  -0.877   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -0.094   0.669   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.419   0.234   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.632  -0.944   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       2.089  -2.134   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.701  -2.431   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       1.822  -3.703   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.871  -4.830   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.420  -6.303   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.919  -6.648   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.130  -5.521   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.321  -4.049   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.159   0.269   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.225  -0.785   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.740  -1.395   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.024  -0.345   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.356   0.561   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.758   0.519   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.062  -0.795   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       7.596  -1.262   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       8.414  -2.668   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       8.594  -0.045   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       7.757   1.309   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.003   2.337   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       6.635   2.429   0.000  0.00  0.00           C+0
HETATM   27  N   UNK     0       5.316   1.488   0.000  0.00  0.00           N+0
HETATM   28  C   UNK     0       3.762   1.769   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.268   1.072   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       0.882   1.913   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       0.523   3.465   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       0.882  -1.706   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       0.775  -3.191   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   32                                                  
CONECT    3    2    4   30                                                  
CONECT    4    3    5   14                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   13                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    8                                                       
CONECT   14    4   15   19                                                  
CONECT   15   14   16   29   32                                             
CONECT   16   15   17                                                       
CONECT   17   16   18   27                                                  
CONECT   18   17   19   24                                                  
CONECT   19   18   14   20   28                                             
CONECT   20   19   21                                                       
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   18   25   26                                             
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   17   28                                                  
CONECT   28   27   19   29                                                  
CONECT   29   28   15   30                                                  
CONECT   30   29    3   31                                                  
CONECT   31   30                                                            
CONECT   32   15    2   33                                                  
CONECT   33   32                                                            
MASTER        0    0    0    0    0    0    0    0   33    0   80    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₂₉NO₅

Average Mass

447.5310 Da

Monoisotopic Mass

447.20457 Da

IUPAC Name

(1S,5R,8R,9S,10R,11S,13R,14S,16S,17R,18S,19S)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-19-yl benzoate

Traditional Name

(1S,5R,8R,9S,10R,11S,13R,14S,16S,17R,18S,19S)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0^{1,8}.0^{5,17}.0^{7,16}.0^{9,14}.0^{14,18}]nonadecan-19-yl benzoate

CAS Registry Number

Not Available

SMILES

C[C@@]12CN3[C@H]4C[C@@]56[C@H]7[C@@H]3[C@@](CC(=O)C1)([C@@H]24)[C@@H]5[C@H](OC(=O)C1=CC=CC=C1)[C@H]([C@@H]7O)C(=C)[C@H]6O

InChI Identifier

InChI=1S/C27H29NO5/c1-12-16-18(30)17-22-27-9-14(29)8-25(2)11-28(22)15(20(25)27)10-26(17,23(12)31)21(27)19(16)33-24(32)13-6-4-3-5-7-13/h3-7,15-23,30-31H,1,8-11H2,2H3/t15-,16-,17+,18-,19+,20+,21+,22+,23+,25-,26+,27-/m0/s1

InChI Key

JLPNEAKFLNGJNM-HVBPDPATSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Aconitum napellus	LOTUS Database	35616633
Delphinium gracile	LOTUS Database	35616633
Delphinium verdunense	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as hetisine-type diterpenoid alkaloids. These are alkaloid diterpenoids with a structure based on the hetisine skeleton, which is a heptacyclic compound with an additional N-C-6 bond as compared with the hetidine-type, and thus, is one of most complex entries in the atisane-class.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Hetisine-type diterpenoid alkaloids

Alternative Parents

Substituents

Hetisine-type diterpenoid alkaloid
Quinolizidine
Isoindolone
Benzoate ester
Azaspirodecane
Alkaloid or derivatives
Isoindole or derivatives
Isoindoline
Indolizidine
Indole or derivatives
Benzoic acid or derivatives
Benzoyl
Azepane
Benzenoid
N-alkylpyrrolidine
Piperidine
Monocyclic benzene moiety
Pyrrolidine
Cyclic alcohol
Cyclic ketone
Tertiary aliphatic amine
Tertiary amine
Secondary alcohol
Ketone
Carboxylic acid ester
Amino acid or derivatives
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Organonitrogen compound
Carbonyl group
Amine
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.93	ALOGPS
logP	0.71	ChemAxon
logS	-2.8	ALOGPS
pKa (Strongest Acidic)	13.95	ChemAxon
pKa (Strongest Basic)	8.23	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	87.07 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	118.61 m³·mol⁻¹	ChemAxon
Polarizability	47.2 Å³	ChemAxon
Number of Rings	8	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00024846

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101933335

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Gonzalez-Coloma A, Guadano A, Gutierrez C, Cabrera R, de La Pena E, de La Fuente G, Reina M: Antifeedant Delphinium Diterpenoid Alkaloids. Structure-Activity Relationships. J Agric Food Chem. 1998 Jan 19;46(1):286-290. doi: 10.1021/jf970585p. [PubMed:10554234 ]
LOTUS database [Link]

Showing NP-Card for (1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate (NP0144729)

MOL for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

3D MOL for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

3D SDF for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

3D-SDF for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

PDB for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

3D PDB for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

SMILES for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

INCHI for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

Structure for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)

3D Structure for NP0144729 ((1s,5r,8r,9s,10r,11s,13r,14s,16s,17r,18s,19s)-10,13-dihydroxy-5-methyl-12-methylidene-3-oxo-7-azaheptacyclo[9.6.2.0¹,⁸.0⁵,¹⁷.0⁷,¹⁶.0⁹,¹⁴.0¹⁴,¹⁸]nonadecan-19-yl benzoate)