NP-MRD: Showing NP-Card for geranyl hexanoate (NP0142735)

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Record Information

Version

2.0

Created at

2022-09-01 21:20:37 UTC

Updated at

2022-09-01 21:20:37 UTC

NP-MRD ID

NP0142735

Secondary Accession Numbers

None

Natural Product Identification

Common Name

geranyl hexanoate

Description

(E)-3,7-dimethyl-2,6-octadienyl hexanoate belongs to the class of organic compounds known as fatty alcohol esters. geranyl hexanoate is found in Cymbopogon martinii, Origanum syriacum, Pelargonium citronellum, Pelargonium quercifolium and Tordylium apulum. These are ester derivatives of a fatty alcohol (e)-3,7-dimethyl-2,6-octadienyl hexanoate is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 46 45  0  0  0  0  0  0  0  0999 V2000
    7.5949   -0.4764    0.3652 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0961   -0.4107    0.1322 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8464    0.3620   -1.1397 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3830    0.4349   -1.3964 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5753    1.1170   -0.3221 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1383    1.0947   -0.7765 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7694    1.9334   -1.6330 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2255    0.1994   -0.2933 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1441    0.1822   -0.7302 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8760   -0.8818   -0.0416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9277   -0.5957    0.7180 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3072    0.8365    0.8252 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6613   -1.6918    1.4240 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0931   -1.8137    1.0207 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8486   -0.5818    1.3217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4605    0.1529    0.4018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4046   -0.2575   -1.0322 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2043    1.3788    0.7633 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0297    0.4188   -0.1067 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.7910   -0.5363    1.4496 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9970   -1.4057   -0.0941 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7485   -1.4590    0.0641 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5711    0.0498    0.9887 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3493    1.3423   -1.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3062   -0.1745   -2.0214 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9320   -0.5930   -1.5074 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1419    0.9265   -2.3811 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6802    0.6155    0.6556 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8978    2.1588   -0.1987 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0571   -0.1591   -1.8091 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5983    1.1693   -0.7421 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5577   -1.9067   -0.1531 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4189    1.4651    1.0704 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9893    0.9513    1.6858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8189    1.2152   -0.0808 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5826   -1.4161    2.5171 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1062   -2.6531    1.3499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2012   -1.9859   -0.0788 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5280   -2.6775    1.5901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9132   -0.2556    2.3700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8213   -1.2997   -1.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3707   -0.2021   -1.4092 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0848    0.3617   -1.6560 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0193    1.1262    1.4755 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5036    2.0459    1.3420 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5753    1.8956   -0.1275 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9  8  1  0
  8  6  1  0
  6  7  2  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  1  0
 10 11  2  0
 11 12  1  0
 11 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  2  3
 16 17  1  0
 16 18  1  0
 10 32  1  0
  9 30  1  0
  9 31  1  0
  5 28  1  0
  5 29  1  0
  4 26  1  0
  4 27  1  0
  3 24  1  0
  3 25  1  0
  2 22  1  0
  2 23  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
 12 33  1  0
 12 34  1  0
 12 35  1  0
 13 36  1  0
 13 37  1  0
 14 38  1  0
 14 39  1  0
 15 40  1  0
 17 41  1  0
 17 42  1  0
 17 43  1  0
 18 44  1  0
 18 45  1  0
 18 46  1  0
M  END

  Mrv1572004251601512D          

 19 18  0  0  0  0            999 V2000
    2.5855   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.5881   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8737   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0158   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3000   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0145   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7289   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4447   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1592   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7302   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4434   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3013   -1.0164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.5868   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.8737   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0158   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.8724   -1.0164    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.3013   -0.1914    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  5  1  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  9  8  1  0  0  0  0
 10  8  1  0  0  0  0
 11  7  1  0  0  0  0
 13 12  1  0  0  0  0
 14  2  1  0  0  0  0
 14  3  1  0  0  0  0
 14  9  2  0  0  0  0
 15  4  1  0  0  0  0
 15 10  1  0  0  0  0
 15 12  2  0  0  0  0
 16 11  1  0  0  0  0
 17 16  2  0  0  0  0
 18 13  1  0  0  0  0
 18 16  1  0  0  0  0
 19 12  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0142735

> <DATABASE_NAME>
NP-MRD

> <SMILES>
[H]\C(COC(=O)CCCCC)=C(\C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C16H28O2/c1-5-6-7-11-16(17)18-13-12-15(4)10-8-9-14(2)3/h9,12H,5-8,10-11,13H2,1-4H3/b15-12+

> <INCHI_KEY>
ARVSCQUZFFSNKF-NTCAYCPXSA-N

> <FORMULA>
C16H28O2

> <MOLECULAR_WEIGHT>
252.398

> <EXACT_MASS>
252.208930142

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
46

> <JCHEM_AVERAGE_POLARIZABILITY>
31.939157991201235

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E)-3,7-dimethylocta-2,6-dien-1-yl hexanoate

> <ALOGPS_LOGP>
5.90

> <JCHEM_LOGP>
4.977750548333333

> <ALOGPS_LOGS>
-4.30

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-7.043362495161395

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
78.7635

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.27e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-3,7-dimethylocta-2,6-dien-1-yl hexanoate

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 25-APR-16   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-16         0                                  
HETATM    1  C   UNK     0       4.826  -1.897   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      23.498  -1.897   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      22.164  -4.207   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      16.829  -4.207   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.160  -2.667   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.494  -1.897   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.827  -2.667   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      19.497  -2.667   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      20.830  -1.897   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      18.163  -1.897   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.161  -1.897   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      15.496  -1.897   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.162  -2.667   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      22.164  -2.667   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      16.829  -2.667   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.495  -2.667   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      11.495  -4.207   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0      12.828  -1.897   0.000  0.00  0.00           O+0
HETATM   19  H   UNK     0      15.496  -0.357   0.000  0.00  0.00           H+0
CONECT    1    5                                                            
CONECT    2   14                                                            
CONECT    3   14                                                            
CONECT    4   15                                                            
CONECT    5    1    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6   11                                                       
CONECT    8    9   10                                                       
CONECT    9    8   14                                                       
CONECT   10    8   15                                                       
CONECT   11    7   16                                                       
CONECT   12   13   15   19                                                  
CONECT   13   12   18                                                       
CONECT   14    2    3    9                                                  
CONECT   15    4   10   12                                                  
CONECT   16   11   17   18                                                  
CONECT   17   16                                                            
CONECT   18   13   16                                                       
CONECT   19   12                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   36    0
END

View in JSmol

Synonyms

Value	Source
(e)-3,7-Dimethyl-2,6-octadienyl hexanoic acid	Generator

Chemical Formula

C₁₆H₂₈O₂

Average Mass

252.3980 Da

Monoisotopic Mass

252.20893 Da

IUPAC Name

(2E)-3,7-dimethylocta-2,6-dien-1-yl hexanoate

Traditional Name

(2E)-3,7-dimethylocta-2,6-dien-1-yl hexanoate

CAS Registry Number

Not Available

SMILES

[H]\C(COC(=O)CCCCC)=C(\C)CCC=C(C)C

InChI Identifier

InChI=1S/C16H28O2/c1-5-6-7-11-16(17)18-13-12-15(4)10-8-9-14(2)3/h9,12H,5-8,10-11,13H2,1-4H3/b15-12+

InChI Key

ARVSCQUZFFSNKF-NTCAYCPXSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cymbopogon martinii	LOTUS Database	35616633
Origanum syriacum	LOTUS Database	35616633
Pelargonium citronellum	LOTUS Database	35616633
Pelargonium quercifolium	LOTUS Database	35616633
Tordylium apulum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty alcohol esters. These are ester derivatives of a fatty alcohol.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty alcohol esters

Direct Parent

Fatty alcohol esters

Alternative Parents

Substituents

Fatty alcohol ester
Monoterpenoid
Acyclic monoterpenoid
Fatty acid ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Wax monoesters (LMFA07010618 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.9	ALOGPS
logP	4.98	ChemAxon
logS	-4.3	ALOGPS
pKa (Strongest Basic)	-7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	26.3 Å²	ChemAxon
Rotatable Bond Count	10	ChemAxon
Refractivity	78.76 m³·mol⁻¹	ChemAxon
Polarizability	31.94 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5365992

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for geranyl hexanoate (NP0142735)

MOL for NP0142735 (geranyl hexanoate)

3D MOL for NP0142735 (geranyl hexanoate)

3D SDF for NP0142735 (geranyl hexanoate)

3D-SDF for NP0142735 (geranyl hexanoate)

PDB for NP0142735 (geranyl hexanoate)

3D PDB for NP0142735 (geranyl hexanoate)

SMILES for NP0142735 (geranyl hexanoate)

INCHI for NP0142735 (geranyl hexanoate)

Structure for NP0142735 (geranyl hexanoate)

3D Structure for NP0142735 (geranyl hexanoate)