NP-MRD: Showing NP-Card for n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid (NP0142658)

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Record Information

Version

2.0

Created at

2022-09-01 21:14:54 UTC

Updated at

2022-09-01 21:14:55 UTC

NP-MRD ID

NP0142658

Secondary Accession Numbers

None

Natural Product Identification

Common Name

n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid

Description

Cyanopeptolin S belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. Cyanopeptolin S is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004251509572D          

 64 66  0  0  0  0            999 V2000
   10.7255   -5.3159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0023   -4.9190    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2969   -5.3469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3148   -6.1717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8121   -5.4349    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.5572   -6.2195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0421   -6.8870    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.7322   -6.2195    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2473   -6.8870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5828   -7.6407    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4033   -7.7269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7389   -8.4806    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2539   -9.1480    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4335   -9.0618    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0979   -8.3081    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4773   -5.4349    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.1296   -4.9298    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3639   -5.6962    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1808   -4.6237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8019   -4.7924    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -1.2375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -2.0625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -2.4750    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   11.0190   -3.1895    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8440   -1.7605    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.6797   -2.9737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -3.7125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 21 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  2  0  0  0  0
 40 42  1  0  0  0  0
 35 43  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  2  0  0  0  0
 44 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  2  0  0  0  0
 48 50  1  0  0  0  0
 50 51  1  0  0  0  0
 50 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  2  0  0  0  0
 54 56  2  0  0  0  0
 54 57  1  0  0  0  0
 46 58  1  0  0  0  0
 58 59  1  0  0  0  0
 58 60  1  0  0  0  0
 60 61  1  0  0  0  0
  5 61  1  0  0  0  0
 61 62  2  0  0  0  0
 31 63  1  0  0  0  0
 26 63  1  0  0  0  0
 63 64  2  0  0  0  0
M  END

     RDKit          3D

127129  0  0  0  0  0  0  0  0999 V2000
    3.9844    7.1681   -0.6559 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2366    7.0571    0.3453 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0371    6.1242    0.7317 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3732    5.9863    2.1162 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.5951    5.2212   -0.2138 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.8838    4.8297   -1.4206 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7026    3.9927   -0.9659 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1936    2.7992   -0.2261 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0813    1.8725    0.2708 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7354    0.8963    1.0925 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.4191   -0.4287    1.3957 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3556   -0.6815    2.6562 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1599   -1.5490    0.4881 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.3265   -2.4261    0.3833 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.9564   -2.7160   -0.8438 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4601   -2.1731   -1.8821 O   0  0  0  0  0  0  0  0  0  0  0  0
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    7.5011   -1.6574   -0.7635 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.2938   -5.1074   -1.9006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6019   -3.0446    0.1651 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3892   -2.1987   -0.5954 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.3543    0.6549   -2.1043 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1719    1.8115   -0.4157 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0562    3.3111   -0.3086 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.0791    3.9433   -1.5018 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3260    4.8931   -0.5535 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9495    1.1331   -0.9676 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.3127    1.3851   -0.8669 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0231    1.1592   -1.9357 O   0  0  0  0  0  0  0  0  0  0  0  0
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   10.0116   -2.7454   -0.0449 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv1533004251509572D          

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M  END
> <DATABASE_ID>
NP0142658

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(C)C1NC(=O)C(CC2=CC=CC=C2)N(C)C(=O)C(C(C)CC)N2C(O)CCC(NC(=O)C(CCCNC(N)=N)NC(=O)C(NC(=O)C(O)COS(O)(=O)=O)C(C)OC1=O)C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C40H63N9O14S/c1-7-21(3)30-39(58)63-23(5)31(47-35(54)28(50)20-62-64(59,60)61)36(55)44-25(15-12-18-43-40(41)42)33(52)45-26-16-17-29(51)49(37(26)56)32(22(4)8-2)38(57)48(6)27(34(53)46-30)19-24-13-10-9-11-14-24/h9-11,13-14,21-23,25-32,50-51H,7-8,12,15-20H2,1-6H3,(H,44,55)(H,45,52)(H,46,53)(H,47,54)(H4,41,42,43)(H,59,60,61)

> <INCHI_KEY>
LQLBUPVHKUILGJ-UHFFFAOYSA-N

> <FORMULA>
C40H63N9O14S

> <MOLECULAR_WEIGHT>
926.05

> <EXACT_MASS>
925.421518919

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
127

> <JCHEM_AVERAGE_POLARIZABILITY>
92.58360579603375

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
10

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[5-benzyl-2,8-bis(butan-2-yl)-15-(3-carbamimidamidopropyl)-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-hydroxyethoxy)sulfonic acid

> <ALOGPS_LOGP>
-0.53

> <JCHEM_LOGP>
-1.7269595989715945

> <ALOGPS_LOGS>
-3.77

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
11.162141276319115

> <JCHEM_PKA_STRONGEST_ACIDIC>
-1.9545659856005688

> <JCHEM_PKA_STRONGEST_BASIC>
11.922659852769039

> <JCHEM_POLAR_SURFACE_AREA>
349.28000000000003

> <JCHEM_REFRACTIVITY>
235.59410000000014

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.58e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{[5-benzyl-15-(3-carbamimidamidopropyl)-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-hydroxyethoxysulfonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-APR-15         0                                  
HETATM    1  C   UNK     0      20.021  -9.923   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      18.671  -9.182   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      17.354  -9.981   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      17.388 -11.520   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      16.004  -9.240   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0      14.583 -10.145   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0      14.107 -11.610   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      15.012 -12.856   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      12.567 -11.610   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.662 -12.856   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.288 -14.263   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.820 -14.424   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.446 -15.830   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      13.541 -17.076   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      12.009 -16.915   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.383 -15.508   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0      12.091 -10.145   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0      13.309  -9.202   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      10.013 -10.633   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      10.669  -7.700   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.336  -8.470   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       7.804  -8.631   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.336 -10.010   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       8.002 -10.780   0.000  0.00  0.00           C+0
HETATM   26  N   UNK     0       9.336  -6.930   0.000  0.00  0.00           N+0
HETATM   27  C   UNK     0       8.002  -7.700   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       7.097  -8.946   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   32  N   UNK     0       8.002  -3.080   0.000  0.00  0.00           N+0
HETATM   33  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0       9.336  -0.770   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      10.669  -3.080   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      10.669  -1.540   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      12.003  -0.770   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      13.337  -1.540   0.000  0.00  0.00           C+0
HETATM   39  N   UNK     0      14.670  -0.770   0.000  0.00  0.00           N+0
HETATM   40  C   UNK     0      16.004  -1.540   0.000  0.00  0.00           C+0
HETATM   41  N   UNK     0      17.338  -0.770   0.000  0.00  0.00           N+0
HETATM   42  N   UNK     0      16.004  -3.080   0.000  0.00  0.00           N+0
HETATM   43  N   UNK     0      12.003  -2.310   0.000  0.00  0.00           N+0
HETATM   44  C   UNK     0      13.337  -3.080   0.000  0.00  0.00           C+0
HETATM   45  O   UNK     0      14.670  -2.310   0.000  0.00  0.00           O+0
HETATM   46  C   UNK     0      13.337  -4.620   0.000  0.00  0.00           C+0
HETATM   47  N   UNK     0      14.670  -3.850   0.000  0.00  0.00           N+0
HETATM   48  C   UNK     0      16.004  -4.620   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0      16.004  -6.160   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      17.338  -3.850   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0      17.338  -2.310   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      18.672  -4.620   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      20.005  -3.850   0.000  0.00  0.00           O+0
HETATM   54  S   UNK     0      21.339  -4.620   0.000  0.00  0.00           S+0
HETATM   55  O   UNK     0      20.569  -5.954   0.000  0.00  0.00           O+0
HETATM   56  O   UNK     0      22.109  -3.286   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0      22.673  -5.390   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0      14.670  -5.390   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      16.202  -5.551   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0      14.670  -6.930   0.000  0.00  0.00           O+0
HETATM   61  C   UNK     0      16.004  -7.700   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0      17.338  -6.930   0.000  0.00  0.00           O+0
HETATM   63  C   UNK     0       9.336  -5.390   0.000  0.00  0.00           C+0
HETATM   64  O   UNK     0      10.669  -4.620   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   61                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   17                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11                                                       
CONECT   17    9   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   26                                                  
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24                                                            
CONECT   26   21   27   63                                                  
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   63                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36   43                                                  
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41   42                                                  
CONECT   41   40                                                            
CONECT   42   40                                                            
CONECT   43   35   44                                                       
CONECT   44   43   45   46                                                  
CONECT   45   44                                                            
CONECT   46   44   47   58                                                  
CONECT   47   46   48                                                       
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   48   51   52                                                  
CONECT   51   50                                                            
CONECT   52   50   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55   56   57                                             
CONECT   55   54                                                            
CONECT   56   54                                                            
CONECT   57   54                                                            
CONECT   58   46   59   60                                                  
CONECT   59   58                                                            
CONECT   60   58   61                                                       
CONECT   61   60    5   62                                                  
CONECT   62   61                                                            
CONECT   63   31   26   64                                                  
CONECT   64   63                                                            
MASTER        0    0    0    0    0    0    0    0   64    0  132    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₀H₆₃N₉O₁₄S

Average Mass

926.0500 Da

Monoisotopic Mass

925.42152 Da

IUPAC Name

(2-{[5-benzyl-2,8-bis(butan-2-yl)-15-(3-carbamimidamidopropyl)-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-hydroxyethoxy)sulfonic acid

Traditional Name

2-{[5-benzyl-15-(3-carbamimidamidopropyl)-21-hydroxy-4,11-dimethyl-3,6,9,13,16,22-hexaoxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosan-12-yl]carbamoyl}-2-hydroxyethoxysulfonic acid

CAS Registry Number

Not Available

SMILES

CCC(C)C1NC(=O)C(CC2=CC=CC=C2)N(C)C(=O)C(C(C)CC)N2C(O)CCC(NC(=O)C(CCCNC(N)=N)NC(=O)C(NC(=O)C(O)COS(O)(=O)=O)C(C)OC1=O)C2=O

InChI Identifier

InChI=1S/C40H63N9O14S/c1-7-21(3)30-39(58)63-23(5)31(47-35(54)28(50)20-62-64(59,60)61)36(55)44-25(15-12-18-43-40(41)42)33(52)45-26-16-17-29(51)49(37(26)56)32(22(4)8-2)38(57)48(6)27(34(53)46-30)19-24-13-10-9-11-14-24/h9-11,13-14,21-23,25-32,50-51H,7-8,12,15-20H2,1-6H3,(H,44,55)(H,45,52)(H,46,53)(H,47,54)(H4,41,42,43)(H,59,60,61)

InChI Key

LQLBUPVHKUILGJ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Depsipeptides

Direct Parent

Cyclic depsipeptides

Alternative Parents

Substituents

Cyclic depsipeptide
Macrolide lactam
Alpha-amino acid ester
Macrolactam
N-acyl-alpha amino acid or derivatives
Alpha-amino acid or derivatives
Delta-lactam
Piperidinone
Monocyclic benzene moiety
Monosaccharide
Piperidine
Sulfuric acid monoester
Sulfate-ester
Alkyl sulfate
Sulfuric acid ester
Benzenoid
Organic sulfuric acid or derivatives
Tertiary carboxylic acid amide
Carboxylic acid ester
Secondary carboxylic acid amide
Secondary alcohol
Guanidine
Lactam
Carboxamide group
Lactone
Alkanolamine
Monocarboxylic acid or derivatives
Oxacycle
Azacycle
Carboximidamide
Propargyl-type 1,3-dipolar organic compound
Organoheterocyclic compound
Carboxylic acid derivative
Organic 1,3-dipolar compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organonitrogen compound
Alcohol
Carbonyl group
Organooxygen compound
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

cyclodepsipeptide (CHEBI:80071 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.53	ALOGPS
logP	-1.7	ChemAxon
logS	-3.8	ALOGPS
pKa (Strongest Acidic)	-2	ChemAxon
pKa (Strongest Basic)	11.92	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	10	ChemAxon
Polar Surface Area	349.28 Å²	ChemAxon
Rotatable Bond Count	15	ChemAxon
Refractivity	235.59 m³·mol⁻¹	ChemAxon
Polarizability	92.58 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

C15743

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23724558

PDB ID

Not Available

ChEBI ID

80071

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid (NP0142658)

MOL for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

3D MOL for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

3D SDF for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

3D-SDF for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

PDB for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

3D PDB for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

SMILES for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

INCHI for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

Structure for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)

3D Structure for NP0142658 (n-[5-benzyl-15-(3-carbamimidamidopropyl)-6,13,16,21-tetrahydroxy-4,11-dimethyl-3,9,22-trioxo-2,8-bis(sec-butyl)-10-oxa-1,4,7,14,17-pentaazabicyclo[16.3.1]docosa-6,13,16-trien-12-yl]-2-hydroxy-3-(sulfooxy)propanimidic acid)