NP-MRD: Showing NP-Card for {3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid (NP0142071)

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Record Information

Version

1.0

Created at

2022-09-01 20:31:49 UTC

Updated at

2022-09-01 20:31:49 UTC

NP-MRD ID

NP0142071

Secondary Accession Numbers

None

Natural Product Identification

Common Name

{3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid

Description

{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid belongs to the class of organic compounds known as phenylsulfates. Phenylsulfates are compounds containing a sulfuric acid group conjugated to a phenyl group. It was first documented in 2006 (PMID: 30000380). Based on a literature review a small amount of articles have been published on {3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid (PMID: 33805414) (PMID: 20606697) (PMID: 17456979).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309012222312D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309012222312D          

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   -2.1434  -13.6125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881  -13.6125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026  -13.2000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026  -12.3750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171  -13.6125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171  -14.4375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315  -14.8500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460  -14.4375    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605  -14.0250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5585  -15.1520    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.7335  -13.7230    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026  -14.8500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
  9 11  1  0  0  0  0
 11 12  1  6  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  2  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  2  0  0  0  0
 35 38  1  0  0  0  0
 33 39  2  0  0  0  0
 28 39  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0142071

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCC[C@@H](O)[C@H](O)CCCCCCCCCCCCCCCC1=CC(O)=CC(OS(O)(=O)=O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C31H56O7S/c1-2-3-4-5-16-19-22-30(33)31(34)23-20-17-14-12-10-8-6-7-9-11-13-15-18-21-27-24-28(32)26-29(25-27)38-39(35,36)37/h24-26,30-34H,2-23H2,1H3,(H,35,36,37)/t30-,31-/m1/s1

> <INCHI_KEY>
WCKTYVLAIUWOQF-FIRIVFDPSA-N

> <FORMULA>
C31H56O7S

> <MOLECULAR_WEIGHT>
572.84

> <EXACT_MASS>
572.374675317

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
95

> <JCHEM_AVERAGE_POLARIZABILITY>
70.3320185620275

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid

> <ALOGPS_LOGP>
5.04

> <JCHEM_LOGP>
7.780388428575483

> <ALOGPS_LOGS>
-6.58

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
9.098966635373193

> <JCHEM_PKA_STRONGEST_ACIDIC>
-1.9713569430208011

> <JCHEM_PKA_STRONGEST_BASIC>
-3.144019257176205

> <JCHEM_POLAR_SURFACE_AREA>
124.29

> <JCHEM_REFRACTIVITY>
158.5078

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.50e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 01-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   01-SEP-22         0                                  
HETATM    1  C   UNK     0     -16.004 -27.720   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -14.670 -26.950   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -13.337 -27.720   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -12.003 -26.950   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -10.669 -27.720   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -9.336 -26.950   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -8.002 -27.720   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -6.668 -26.950   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -5.335 -27.720   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -5.335 -29.260   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -4.001 -26.950   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -4.001 -25.410   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -2.667 -27.720   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.334 -26.950   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000 -27.720   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334 -26.950   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.667 -27.720   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.001 -26.950   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       5.335 -27.720   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.668 -26.950   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.002 -27.720   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.336 -26.950   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      10.669 -27.720   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      12.003 -26.950   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      13.337 -27.720   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      14.670 -26.950   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      16.004 -27.720   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      17.338 -26.950   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      17.338 -25.410   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      18.672 -24.640   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      18.672 -23.100   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      20.005 -25.410   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      20.005 -26.950   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      21.339 -27.720   0.000  0.00  0.00           O+0
HETATM   35  S   UNK     0      22.673 -26.950   0.000  0.00  0.00           S+0
HETATM   36  O   UNK     0      24.006 -26.180   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0      23.443 -28.284   0.000  0.00  0.00           O+0
HETATM   38  O   UNK     0      21.903 -25.616   0.000  0.00  0.00           O+0
HETATM   39  C   UNK     0      18.672 -27.720   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   39                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32   34   39                                                  
CONECT   34   33   35                                                       
CONECT   35   34   36   37   38                                             
CONECT   36   35                                                            
CONECT   37   35                                                            
CONECT   38   35                                                            
CONECT   39   33   28                                                       
MASTER        0    0    0    0    0    0    0    0   39    0   78    0
END

View in JSmol

Synonyms

Value	Source
{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonate	Generator
{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulphonate	Generator
{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulphonic acid	Generator

Chemical Formula

C₃₁H₅₆O₇S

Average Mass

572.8400 Da

Monoisotopic Mass

572.37468 Da

IUPAC Name

{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid

Traditional Name

{3-[(16R,17R)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCC[C@@H](O)[C@H](O)CCCCCCCCCCCCCCCC1=CC(O)=CC(OS(O)(=O)=O)=C1

InChI Identifier

InChI=1S/C31H56O7S/c1-2-3-4-5-16-19-22-30(33)31(34)23-20-17-14-12-10-8-6-7-9-11-13-15-18-21-27-24-28(32)26-29(25-27)38-39(35,36)37/h24-26,30-34H,2-23H2,1H3,(H,35,36,37)/t30-,31-/m1/s1

InChI Key

WCKTYVLAIUWOQF-FIRIVFDPSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phenylsulfates. Phenylsulfates are compounds containing a sulfuric acid group conjugated to a phenyl group.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Organic sulfuric acids and derivatives

Sub Class

Arylsulfates

Direct Parent

Phenylsulfates

Alternative Parents

Substituents

Phenylsulfate
Phenoxy compound
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Benzenoid
Sulfuric acid ester
Sulfate-ester
Sulfuric acid monoester
Monocyclic benzene moiety
Secondary alcohol
1,2-diol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.04	ALOGPS
logP	7.78	ChemAxon
logS	-6.6	ALOGPS
pKa (Strongest Acidic)	-2	ChemAxon
pKa (Strongest Basic)	-3.1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	124.29 Å²	ChemAxon
Rotatable Bond Count	26	ChemAxon
Refractivity	158.51 m³·mol⁻¹	ChemAxon
Polarizability	70.33 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162986740

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wan J, Wang XJ, Guo N, Wu XY, Xiong J, Zang Y, Jiang CX, Han B, Li J, Hu JF: Highly Oxygenated Triterpenoids and Diterpenoids from Fructus Rubi (Rubus chingii Hu) and Their NF-kappa B Inhibitory Effects. Molecules. 2021 Mar 29;26(7). pii: molecules26071911. doi: 10.3390/molecules26071911. [PubMed:33805414 ]
Authors unspecified: Amphotericin B. 2006. [PubMed:30000380 ]
Wang YH, Zhang JP, Chang Y, Hu CQ: A newly identified derivative of amphotericin B: isolation, structure determination and primary evaluation of the activity and toxicity. J Antibiot (Tokyo). 2010 Sep;63(9):553-7. doi: 10.1038/ja.2010.80. Epub 2010 Jul 7. [PubMed:20606697 ]
Li J, Zhu HQ, Li JY, Jin SH, Hu CQ: Isolation, structure elucidation and activity of an unknown impurity of amphotericin B. J Antibiot (Tokyo). 2007 Apr;60(4):272-6. doi: 10.1038/ja.2007.34. [PubMed:17456979 ]
LOTUS database [Link]

Showing NP-Card for {3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid (NP0142071)

MOL for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

3D MOL for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

3D SDF for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

3D-SDF for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

PDB for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

3D PDB for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

SMILES for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

INCHI for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

Structure for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)

3D Structure for NP0142071 ({3-[(16r,17r)-16,17-dihydroxypentacosyl]-5-hydroxyphenyl}oxidanesulfonic acid)