NP-MRD: Showing NP-Card for Pterodontic acid (NP0140498)

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Record Information

Version

2.0

Created at

2022-06-29 21:37:21 UTC

Updated at

2022-06-29 21:37:21 UTC

NP-MRD ID

NP0140498

Secondary Accession Numbers

None

Natural Product Identification

Common Name

Pterodontic acid

Description

Pterodontic acid, also known as pterodontate, belongs to the class of organic compounds known as eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids. These are sesquiterpenoids with a structure based on the eudesmane skeleton. Pterodontic acid was first documented in 2007 (PMID: 17703774). Based on a literature review a small amount of articles have been published on Pterodontic acid (PMID: 29749442) (PMID: 34029655) (PMID: 30783895) (PMID: 29035328).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 40  0  0  0  0  0  0  0  0999 V2000
    3.9112   -0.0023   -1.7612 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0787   -0.1927   -0.7607 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5499   -0.9345    0.3862 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7089   -1.3790    0.4254 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7066   -1.1531    1.4504 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7178    0.3645   -0.8800 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6534   -0.6337   -0.8100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5200   -0.3394   -0.2839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5639   -1.4405   -0.2559 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.4122   -2.3425    0.9151 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9294   -0.7685   -0.2046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8374    0.4366   -1.1166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1615    1.5266   -0.2793 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8574    0.9978    0.2708 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9844    0.9152    1.7865 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2034    2.0239   -0.0376 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5367    1.3548    0.2496 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5831    0.5455   -2.6254 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9243   -0.3677   -1.7722 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6501   -2.0559    1.9405 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6490    0.9518   -1.8314 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8115   -1.6600   -1.1986 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5374   -2.0354   -1.1854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0906   -2.1045    1.7590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6669   -3.3773    0.6070 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3463   -2.3640    1.2341 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1201   -0.4589    0.8433 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7143   -1.4791   -0.5230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1680    0.2333   -1.9886 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8223    0.7957   -1.4489 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8704    1.7732    0.5340 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0484    2.4007   -0.9238 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0072    1.2406    2.1181 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2838    1.6059    2.2900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7740   -0.1356    2.1327 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1773    2.2481   -1.1256 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0190    2.9023    0.5953 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3607    2.0997    0.2621 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4743    0.8084    1.2127 H   0  0  0  0  0  0  0  0  0  0  0  0
 10  9  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  1
 14 16  1  0
 16 17  1  0
 17  6  1  0
  6  7  1  0
  7  8  2  0
  6  2  1  0
  2  1  2  3
  2  3  1  0
  3  5  1  0
  3  4  2  0
  8  9  1  0
  8 14  1  0
 10 24  1  0
 10 25  1  0
 10 26  1  0
  9 23  1  6
 11 27  1  0
 11 28  1  0
 12 29  1  0
 12 30  1  0
 13 31  1  0
 13 32  1  0
 15 33  1  0
 15 34  1  0
 15 35  1  0
 16 36  1  0
 16 37  1  0
 17 38  1  0
 17 39  1  0
  6 21  1  6
  7 22  1  0
  1 18  1  0
  1 19  1  0
  5 20  1  0
M  END


  Mrv1652306292223372D          

 17 18  0  0  1  0            999 V2000
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  6  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  2  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
  6 11  1  0  0  0  0
  9 12  1  6  0  0  0
 12 13  2  0  0  0  0
 12 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
  6 17  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0140498

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1CCC[C@]2(C)CC[C@H](C=C12)C(=C)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C15H22O2/c1-10-5-4-7-15(3)8-6-12(9-13(10)15)11(2)14(16)17/h9-10,12H,2,4-8H2,1,3H3,(H,16,17)/t10-,12+,15+/m0/s1

> <INCHI_KEY>
PHYJIMYAZBSQFJ-JVLSTEMRSA-N

> <FORMULA>
C15H22O2

> <MOLECULAR_WEIGHT>
234.339

> <EXACT_MASS>
234.161979948

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
26.48949499421201

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-[(2R,4aR,8S)-4a,8-dimethyl-2,3,4,4a,5,6,7,8-octahydronaphthalen-2-yl]prop-2-enoic acid

> <ALOGPS_LOGP>
4.43

> <JCHEM_LOGP>
3.7110019906666674

> <ALOGPS_LOGS>
-4.01

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.0401335242798115

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
69.1696

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
2.30e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(2R,4aR,8S)-4a,8-dimethyl-3,4,5,6,7,8-hexahydro-2H-naphthalen-2-yl]prop-2-enoic acid

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 29-JUN-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   29-JUN-22         0                                  
HETATM    1  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0       6.668  -2.310   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       1.334  -3.850   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   11   17                                             
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   12                                                  
CONECT   10    9   11                                                       
CONECT   11   10    6                                                       
CONECT   12    9   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17    6                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Value	Source
Pterodontate	Generator

Chemical Formula

C₁₅H₂₂O₂

Average Mass

234.3390 Da

Monoisotopic Mass

234.16198 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

C[C@H]1CCC[C@]2(C)CC[C@H](C=C12)C(=C)C(O)=O

InChI Identifier

InChI=1S/C15H22O2/c1-10-5-4-7-15(3)8-6-12(9-13(10)15)11(2)14(16)17/h9-10,12H,2,4-8H2,1,3H3,(H,16,17)/t10-,12+,15+/m0/s1

InChI Key

PHYJIMYAZBSQFJ-JVLSTEMRSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids. These are sesquiterpenoids with a structure based on the eudesmane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoids

Alternative Parents

Substituents

Eudesmane, isoeudesmane or cycloeudesmane sesquiterpenoid
Monocarboxylic acid or derivatives
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

21179422

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

91895390

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wang Y, Li J, Yan W, Chen Q, Jiang Z, Zhang R, Pan X, Wang X: An active component containing pterodontic acid and pterodondiol isolated from Laggera pterodonta inhibits influenza A virus infection through the TLR7/MyD88/TRAF6/NFkappaB signaling pathway. Mol Med Rep. 2018 Jul;18(1):523-531. doi: 10.3892/mmr.2018.8947. Epub 2018 May 2. [PubMed:29749442 ]
Yang GZ, Li YF, Yu X, Mei ZN: Terpenoids and flavonoids from Laggera pterodonta. Yao Xue Xue Bao. 2007 May;42(5):511-5. [PubMed:17703774 ]
Lin YJ, Huang BL, Dai SY, Song LD, Yu HF, Yu XL, Zhang RP: Synthesis of pterodontic acid derivatives and the study of their anti-influenza A virus (H1N1) activity. Fitoterapia. 2021 Jul;152:104942. doi: 10.1016/j.fitote.2021.104942. Epub 2021 May 21. [PubMed:34029655 ]
Wang Y, Zeng Z, Chen Q, Yan W, Chen Y, Xia X, Song W, Wang X: Pterodontic acid isolated from Laggera pterodonta suppressed RIG-I/NF-KB/STAT1/Type I interferon and programmed death-ligand 1/2 activation induced by influenza A virus in vitro. Inflammopharmacology. 2019 Dec;27(6):1255-1263. doi: 10.1007/s10787-019-00571-y. Epub 2019 Feb 19. [PubMed:30783895 ]
Guan W, Li J, Chen Q, Jiang Z, Zhang R, Wang X, Yang Z, Pan X: Pterodontic Acid Isolated from Laggera pterodonta Inhibits Viral Replication and Inflammation Induced by Influenza A Virus. Molecules. 2017 Oct 16;22(10). pii: molecules22101738. doi: 10.3390/molecules22101738. [PubMed:29035328 ]

Showing NP-Card for Pterodontic acid (NP0140498)

MOL for NP0140498 (Pterodontic acid)

3D MOL for NP0140498 (Pterodontic acid)

3D SDF for NP0140498 (Pterodontic acid)

3D-SDF for NP0140498 (Pterodontic acid)

PDB for NP0140498 (Pterodontic acid)

3D PDB for NP0140498 (Pterodontic acid)

SMILES for NP0140498 (Pterodontic acid)

INCHI for NP0140498 (Pterodontic acid)

Structure for NP0140498 (Pterodontic acid)

3D Structure for NP0140498 (Pterodontic acid)